Difference between revisions of "RIBULP3EPIM-RXN"
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(Created page with "Category:reaction == Reaction 3.1.3.67-RXN == * direction: ** left-to-right * common-name: ** phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase * ec-number: ** [http:...") |
(Created page with "Category:reaction == Reaction RIBULP3EPIM-RXN == * direction: ** reversible * common-name: ** ribulose-5-phosphate 3-epimerase * ec-number: ** [http://enzyme.expasy.org/EC...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction RIBULP3EPIM-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** ribulose-5-phosphate 3-epimerase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/5.1.3.1 ec-5.1.3.1] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[RIBULOSE-5P]][c] '''<=>''' 1 [[XYLULOSE-5-PHOSPHATE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ11687]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ04905]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle): |
− | ** ''' | + | ** '''7''' reactions found over '''9''' reactions in the full pathway |
+ | * [[P21-PWY]], pentose phosphate pathway (partial): | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch) I: | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5723]], Rubisco shunt: | ||
+ | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[P124-PWY]], Bifidobacterium shunt: | ||
+ | ** '''12''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[P122-PWY]], heterolactic fermentation: | ||
+ | ** '''16''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * category: [[orthology]]; source: [[ | + | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
== External links == | == External links == | ||
− | * METANETX-RXN : | + | * METANETX-RXN : MNXR104083 |
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13680 13680] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01529 R01529] |
− | {{#set: direction= | + | * UNIPROT: |
− | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/P40117 P40117] |
− | {{#set: ec-number=ec- | + | ** [http://www.uniprot.org/uniprot/Q9CEB9 Q9CEB9] |
+ | ** [http://www.uniprot.org/uniprot/P0AG07 P0AG07] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PI57 Q9PI57] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JUA9 Q9JUA9] | ||
+ | ** [http://www.uniprot.org/uniprot/P45455 P45455] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43157 Q43157] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43843 Q43843] | ||
+ | ** [http://www.uniprot.org/uniprot/P74061 P74061] | ||
+ | ** [http://www.uniprot.org/uniprot/O23782 O23782] | ||
+ | ** [http://www.uniprot.org/uniprot/P51012 P51012] | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=ribulose-5-phosphate 3-epimerase}} | ||
+ | {{#set: ec-number=ec-5.1.3.1}} | ||
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=8}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
− | {{#set: reconstruction tool=pantograph | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Latest revision as of 11:23, 18 March 2021
Contents
Reaction RIBULP3EPIM-RXN
- direction:
- reversible
- common-name:
- ribulose-5-phosphate 3-epimerase
- ec-number:
Reaction formula
- 1 RIBULOSE-5P[c] <=> 1 XYLULOSE-5-PHOSPHATE[c]
Gene(s) associated with this reaction
- Gene: SJ11687
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ04905
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
- 7 reactions found over 9 reactions in the full pathway
- P21-PWY, pentose phosphate pathway (partial):
- 3 reactions found over 3 reactions in the full pathway
- NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch) I:
- 5 reactions found over 5 reactions in the full pathway
- PWY-5723, Rubisco shunt:
- 10 reactions found over 10 reactions in the full pathway
- P124-PWY, Bifidobacterium shunt:
- 12 reactions found over 15 reactions in the full pathway
- CALVIN-PWY, Calvin-Benson-Bassham cycle:
- 12 reactions found over 13 reactions in the full pathway
- P122-PWY, heterolactic fermentation:
- 16 reactions found over 18 reactions in the full pathway
- P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
- 11 reactions found over 12 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
External links
- METANETX-RXN : MNXR104083
- RHEA:
- LIGAND-RXN:
- UNIPROT: