Difference between revisions of "SJ19719"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CHOLATE CHOLATE] == * common-name: ** cholate * smiles: ** cc(ccc(=o)[o-])[ch]2(cc[ch]3([ch]4(c...")
(Created page with "Category:gene == Gene SJ19719 == * transcription-direction: ** positive * right-end-position: ** 180530 * left-end-position: ** 162989 * centisome-position: ** 73.356346...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CHOLATE CHOLATE] ==
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== Gene SJ19719 ==
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* common-name:
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* transcription-direction:
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** cholate
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** positive
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* smiles:
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* right-end-position:
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** cc(ccc(=o)[o-])[ch]2(cc[ch]3([ch]4(c(o)c[ch]1(cc(o)ccc(c)1[ch](cc(o)c(c)23)4))))
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** 180530
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* inchi-key:
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* left-end-position:
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** bhqcqffyrzlcqq-oeldtzbjsa-m
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** 162989
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* molecular-weight:
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* centisome-position:
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** 407.569
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** 73.356346   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[7-ALPHA-HYDROXYSTEROID-DEH-RXN]]
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) known to produce the compound ==
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== Reaction(s) associated ==
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== Reaction(s) of unknown directionality ==
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* [[DIHYDROXYISOVALDEHYDRAT-RXN]]
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{{#set: common-name=cholate}}
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** Category: [[annotation]]
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{{#set: inchi-key=inchikey=bhqcqffyrzlcqq-oeldtzbjsa-m}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: molecular-weight=407.569}}
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[DIHYDROXYMETVALDEHYDRAT-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[PGLUCONDEHYDRAT-RXN]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-11717]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== Pathway(s) associated ==
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* [[VALSYN-PWY]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7111]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-5103]]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* [[ILEUSYN-PWY]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5101]]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5104]]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [[ENTNER-DOUDOROFF-PWY]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6627]]
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** '''3''' reactions found over '''15''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=180530}}
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{{#set: left-end-position=162989}}
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{{#set: centisome-position=73.356346    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=4}}
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{{#set: nb pathway associated=8}}

Latest revision as of 11:01, 18 March 2021

Gene SJ19719

  • transcription-direction:
    • positive
  • right-end-position:
    • 180530
  • left-end-position:
    • 162989
  • centisome-position:
    • 73.356346

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • VALSYN-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7111
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5103
    • 3 reactions found over 7 reactions in the full pathway
  • ILEUSYN-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-5101
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-5104
    • 2 reactions found over 6 reactions in the full pathway
  • ENTNER-DOUDOROFF-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6627
    • 3 reactions found over 15 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ19719&oldid=131948"