Difference between revisions of "SJ00518"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GlcNAc-GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Core GlcNAc-GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Core] == * common-...")
(Created page with "Category:gene == Gene SJ00518 == * transcription-direction: ** negative * right-end-position: ** 175206 * left-end-position: ** 106081 * centisome-position: ** 18.682941...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GlcNAc-GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Core GlcNAc-GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Core] ==
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== Gene SJ00518 ==
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* common-name:
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* transcription-direction:
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** a [protein]-3-o-(α-d-glcnac-(1→4)-β-d-glca-(1→3)-α-d-glcnac-(1→4)-β-d-glca-(1→3)-β-d-gal-(1→3)-β-d-gal-(1→4)-β-d-xyl)-l-serine
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** negative
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== Reaction(s) known to consume the compound ==
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* right-end-position:
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== Reaction(s) known to produce the compound ==
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** 175206
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* [[2.4.1.224-RXN]]
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* left-end-position:
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== Reaction(s) of unknown directionality ==
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** 106081
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{{#set: common-name=a [protein]-3-o-(α-d-glcnac-(1→4)-β-d-glca-(1→3)-α-d-glcnac-(1→4)-β-d-glca-(1→3)-β-d-gal-(1→3)-β-d-gal-(1→4)-β-d-xyl)-l-serine}}
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* centisome-position:
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** 18.682941   
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== Organism(s) associated with this gene  ==
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[ATPASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-11135]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-12195]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-12196]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN0-5462]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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* [[PWY-7539]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6797]]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6147]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6545]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7210]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7198]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7184]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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{{#set: transcription-direction=negative}}
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{{#set: right-end-position=175206}}
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{{#set: left-end-position=106081}}
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{{#set: centisome-position=18.682941    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=8}}
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{{#set: nb pathway associated=7}}

Latest revision as of 11:03, 18 March 2021

Gene SJ00518

  • transcription-direction:
    • negative
  • right-end-position:
    • 175206
  • left-end-position:
    • 106081
  • centisome-position:
    • 18.682941

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7539
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6797
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6147
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway




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