Difference between revisions of "SJ06412"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-KETO-ISOVALERATE 2-KETO-ISOVALERATE] == * common-name: ** 3-methyl-2-oxobutanoate * smiles: *...")
(Created page with "Category:gene == Gene SJ06412 == * transcription-direction: ** negative * right-end-position: ** 475814 * left-end-position: ** 464910 * centisome-position: ** 97.67427...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-KETO-ISOVALERATE 2-KETO-ISOVALERATE] ==
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== Gene SJ06412 ==
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* common-name:
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* transcription-direction:
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** 3-methyl-2-oxobutanoate
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** negative
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* smiles:
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* right-end-position:
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** cc(c(c([o-])=o)=o)c
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** 475814
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* inchi-key:
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* left-end-position:
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** qhkabhooewyvli-uhfffaoysa-m
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** 464910
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* molecular-weight:
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* centisome-position:
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** 115.108
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** 97.67427   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[1.2.1.25-RXN]]
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* [[S.japonica_carotenoid_curated]]
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* [[1.2.4.4-RXN]]
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== Reaction(s) associated ==
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* [[2-ISOPROPYLMALATESYN-RXN]]
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* [[BRANCHED-CHAINAMINOTRANSFERILEU-RXN]]
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* [[3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[BRANCHED-CHAINAMINOTRANSFERLEU-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[BRANCHED-CHAINAMINOTRANSFERVAL-RXN]]
 
* [[BRANCHED-CHAINAMINOTRANSFERVAL-RXN]]
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* [[IPMS]]
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** Category: [[annotation]]
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* [[KETOPANTOALDOLASE-RXN]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[MOHMT]]
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** Category: [[orthology]]
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* [[MTMOHT]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-15635]]
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== Pathway(s) associated ==
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== Reaction(s) known to produce the compound ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[1.2.4.4-RXN]]
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* [[ILEUSYN-PWY]]
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* [[3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[BRANCHED-CHAINAMINOTRANSFERVAL-RXN]]
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* [[ILEUDEG-PWY]]
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* [[DIHYDROXYISOVALDEHYDRAT-RXN]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[KETOPANTOALDOLASE-RXN]]
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* [[PWY-5078]]
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* [[MOHMT]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reaction(s) of unknown directionality ==
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* [[PWY-5103]]
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{{#set: common-name=3-methyl-2-oxobutanoate}}
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** '''3''' reactions found over '''7''' reactions in the full pathway
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{{#set: inchi-key=inchikey=qhkabhooewyvli-uhfffaoysa-m}}
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* [[PWY-5104]]
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{{#set: molecular-weight=115.108}}
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5101]]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5108]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[LEU-DEG2-PWY]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5076]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7767]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[LEUSYN-PWY]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[VALSYN-PWY]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[ALANINE-VALINESYN-PWY]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5057]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[VALDEG-PWY]]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=negative}}
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{{#set: right-end-position=475814}}
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{{#set: left-end-position=464910}}
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{{#set: centisome-position=97.67427    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=3}}
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{{#set: nb pathway associated=15}}

Latest revision as of 11:04, 18 March 2021

Gene SJ06412

  • transcription-direction:
    • negative
  • right-end-position:
    • 475814
  • left-end-position:
    • 464910
  • centisome-position:
    • 97.67427

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • ILEUSYN-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • ILEUDEG-PWY
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5078
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5103
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-5104
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5101
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-5108
    • 2 reactions found over 3 reactions in the full pathway
  • LEU-DEG2-PWY
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-5076
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7767
    • 1 reactions found over 5 reactions in the full pathway
  • LEUSYN-PWY
    • 5 reactions found over 6 reactions in the full pathway
  • VALSYN-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • ALANINE-VALINESYN-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5057
    • 2 reactions found over 3 reactions in the full pathway
  • VALDEG-PWY
    • 6 reactions found over 8 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ06412&oldid=133551"