Difference between revisions of "SJ18078"
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(Created page with "Category:gene == Gene SJ12638 == * transcription-direction: ** positive * right-end-position: ** 298318 * left-end-position: ** 295426 * centisome-position: ** 82.83987...") |
(Created page with "Category:gene == Gene SJ18078 == * transcription-direction: ** positive * right-end-position: ** 72958 * left-end-position: ** 62641 * centisome-position: ** 24.774956...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ18078 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 72958 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 62641 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 24.774956 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[GLYCOPHOSPHORYL-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[GLYMALTOPHOSPHORYL-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[MANNPGUANYLTRANGDP-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[PHENOL-BETA-GLUCOSYLTRANSFERASE-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-12171]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-12392]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-12486]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-14284]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-14285]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-14286]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-14353]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-1826]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-9025]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN0-5182]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN0-5184]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN4FS-12]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN4FS-13]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXNQT-4141]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | * [[PWY-5941]] |
− | ** ''' | + | ** '''3''' reactions found over '''6''' reactions in the full pathway |
+ | * [[GLYCOCAT-PWY]] | ||
+ | ** '''6''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6737]] | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-6731]] | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7238]] | ||
+ | ** '''5''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY4FS-12]] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY4FS-13]] | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-882]] | ||
+ | ** '''6''' reactions found over '''5''' reactions in the full pathway | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=72958}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=62641}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=24.774956 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=18}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=8}} |
Latest revision as of 11:10, 18 March 2021
Contents
Gene SJ18078
- transcription-direction:
- positive
- right-end-position:
- 72958
- left-end-position:
- 62641
- centisome-position:
- 24.774956
Organism(s) associated with this gene
Reaction(s) associated
- GLYCOPHOSPHORYL-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- GLYMALTOPHOSPHORYL-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- MANNPGUANYLTRANGDP-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- PHENOL-BETA-GLUCOSYLTRANSFERASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12171
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12392
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12486
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-14284
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-14285
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-14286
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-14353
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-1826
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-9025
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN0-5182
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN0-5184
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN4FS-12
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN4FS-13
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXNQT-4141
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-5941
- 3 reactions found over 6 reactions in the full pathway
- GLYCOCAT-PWY
- 6 reactions found over 8 reactions in the full pathway
- PWY-6737
- 2 reactions found over 4 reactions in the full pathway
- PWY-6731
- 2 reactions found over 4 reactions in the full pathway
- PWY-7238
- 5 reactions found over 8 reactions in the full pathway
- PWY4FS-12
- 2 reactions found over 2 reactions in the full pathway
- PWY4FS-13
- 2 reactions found over 3 reactions in the full pathway
- PWY-882
- 6 reactions found over 5 reactions in the full pathway