Difference between revisions of "SJ05312"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-14275 CPD-14275] == * common-name: ** (3r)-3-hydroxy-arachidoyl-coa * smiles: ** cccccccccc...")
 
(Created page with "Category:gene == Gene SJ05312 == * transcription-direction: ** positive * right-end-position: ** 21842 * left-end-position: ** 11567 * centisome-position: ** 12.282974...")
 
(9 intermediate revisions by 5 users not shown)
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-14275 CPD-14275] ==
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== Gene SJ05312 ==
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* common-name:
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* transcription-direction:
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** (3r)-3-hydroxy-arachidoyl-coa
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** positive
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* smiles:
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* right-end-position:
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** cccccccccccccccccc(o)cc(=o)sccnc(=o)ccnc(c(o)c(c)(c)cop([o-])(=o)op([o-])(=o)occ1(c(op(=o)([o-])[o-])c(o)c(o1)n3(c=nc2(c(n)=nc=nc=23))))=o
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** 21842
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* inchi-key:
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* left-end-position:
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** knsvymfejlujst-afmyzwiisa-j
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** 11567
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* molecular-weight:
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* centisome-position:
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** 1074.021
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** 12.282974   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[RXN-13302]]
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) known to produce the compound ==
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== Reaction(s) associated ==
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* [[RXN-13298]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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== Reaction(s) of unknown directionality ==
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* [[ATPASE-RXN]]
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{{#set: common-name=(3r)-3-hydroxy-arachidoyl-coa}}
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** Category: [[annotation]]
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{{#set: inchi-key=inchikey=knsvymfejlujst-afmyzwiisa-j}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: molecular-weight=1074.021}}
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* [[DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-11109]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-12195]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-12196]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN0-5462]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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* [[PWY-7539]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6797]]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6147]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6545]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7210]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7198]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7184]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=21842}}
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{{#set: left-end-position=11567}}
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{{#set: centisome-position=12.282974    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=8}}
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{{#set: nb pathway associated=7}}

Latest revision as of 11:01, 18 March 2021

Gene SJ05312

  • transcription-direction:
    • positive
  • right-end-position:
    • 21842
  • left-end-position:
    • 11567
  • centisome-position:
    • 12.282974

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7539
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6797
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6147
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ05312&oldid=132149"