Difference between revisions of "CPD0-2107"

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(Created page with "Category:gene == Gene SJ22429 == * transcription-direction: ** negative * right-end-position: ** 31798 * left-end-position: ** 6664 * centisome-position: ** 3.778849 =...")
(Created page with "Category:metabolite == Metabolite CPD0-2107 == * common-name: ** (s)-3-hydroxydodecanoyl-coa * smiles: ** cccccccccc(o)cc(=o)sccnc(=o)ccnc(c(o)c(c)(c)cop([o-])(=o)op([o-])...")
 
(8 intermediate revisions by 4 users not shown)
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[[Category:gene]]
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[[Category:metabolite]]
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== Gene SJ22429 ==
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== Metabolite CPD0-2107 ==
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* transcription-direction:
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* common-name:
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** negative
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** (s)-3-hydroxydodecanoyl-coa
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* right-end-position:
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* smiles:
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** 31798
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** cccccccccc(o)cc(=o)sccnc(=o)ccnc(c(o)c(c)(c)cop([o-])(=o)op([o-])(=o)occ1(c(op(=o)([o-])[o-])c(o)c(o1)n3(c=nc2(c(n)=nc=nc=23))))=o
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* left-end-position:
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* inchi-key:
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** 6664
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** ijflxrcjwpkgkj-lxixeqkwsa-j
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* centisome-position:
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* molecular-weight:
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** 3.778849   
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** 961.807
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to consume the compound ==
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* [[S.japonica_carotenoid_curated]]
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* [[ECOAH5]]
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== Reaction(s) associated ==
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* [[ECOAH5h]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[ECOAH5m]]
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* [[3.6.4.5-RXN]]
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* [[HACD5]]
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** Category: [[annotation]]
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* [[HACD5h]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[HACD5m]]
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* [[ATPASE-RXN]]
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== Reaction(s) known to produce the compound ==
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** Category: [[annotation]]
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* [[ECOAH5]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[ECOAH5h]]
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** Category: [[orthology]]
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* [[ECOAH5m]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[HACD5]]
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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* [[HACD5h]]
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** Category: [[annotation]]
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* [[HACD5m]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Reaction(s) of unknown directionality ==
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** Category: [[orthology]]
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{{#set: common-name=(s)-3-hydroxydodecanoyl-coa}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: inchi-key=inchikey=ijflxrcjwpkgkj-lxixeqkwsa-j}}
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* [[RXN-12195]]
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{{#set: molecular-weight=961.807}}
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-12196]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN0-5462]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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</div>
 
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== Pathway(s) associated ==
 
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* [[PWY-7210]]
 
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** '''8''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7198]]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7184]]
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-6545]]
 
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
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{{#set: transcription-direction=negative}}
 
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{{#set: right-end-position=31798}}
 
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{{#set: left-end-position=6664}}
 
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{{#set: centisome-position=3.778849    }}
 
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{{#set: organism associated=S.japonica_carotenoid_curated}}
 
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{{#set: nb reaction associated=6}}
 
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{{#set: nb pathway associated=4}}
 

Latest revision as of 11:11, 18 March 2021

Metabolite CPD0-2107

  • common-name:
    • (s)-3-hydroxydodecanoyl-coa
  • smiles:
    • cccccccccc(o)cc(=o)sccnc(=o)ccnc(c(o)c(c)(c)cop([o-])(=o)op([o-])(=o)occ1(c(op(=o)([o-])[o-])c(o)c(o1)n3(c=nc2(c(n)=nc=nc=23))))=o
  • inchi-key:
    • ijflxrcjwpkgkj-lxixeqkwsa-j
  • molecular-weight:
    • 961.807

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD0-2107&oldid=136965"