Difference between revisions of "RXN-12461"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14570 RXN-14570] == * direction: ** left-to-right * common-name: ** n6-l-threonylcarbamoyladeni...")
(Created page with "Category:reaction == Reaction RXN-12461 == * direction: ** left-to-right * common-name: ** trna (carboxymethyluridine34-5-o)-methyltransferase * ec-number: ** [http://enzy...")
 
(8 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14570 RXN-14570] ==
+
== Reaction RXN-12461 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** n6-l-threonylcarbamoyladenine synthase
+
** trna (carboxymethyluridine34-5-o)-methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.234 ec-2.3.1.234]
+
** [http://enzyme.expasy.org/EC/2.1.1.229 ec-2.1.1.229]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-15435]][c] '''+''' 1 [[tRNA-adenine-37]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[N6-L-threonylcarbamoyladenine37-tRNAs]][c]
+
* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[carbo-me-ur-34-tRNA]][c] '''=>''' 1 [[5-2-me-oxy-2-oxo-et-ur-34-tRNA]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03406]]
+
* Gene: [[SJ02625]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12799]]
+
* Gene: [[SJ16612]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1587]], N6-L-threonylcarbamoyladenosine37-modified tRNA biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1587 PWY0-1587]
+
* [[PWY-6829]], tRNA methylation (yeast):
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''11''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-7888]], tRNA-uridine 2-thiolation (cytoplasmic):
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR117573
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43209 43209]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=n6-l-threonylcarbamoyladenine synthase}}
+
{{#set: common-name=trna (carboxymethyluridine34-5-o)-methyltransferase}}
−
{{#set: ec-number=ec-2.3.1.234}}
+
{{#set: ec-number=ec-2.1.1.229}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction RXN-12461

  • direction:
    • left-to-right
  • common-name:
    • trna (carboxymethyluridine34-5-o)-methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6829, tRNA methylation (yeast):
    • 11 reactions found over 15 reactions in the full pathway
  • PWY-7888, tRNA-uridine 2-thiolation (cytoplasmic):
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR117573
  • RHEA:





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-12461&oldid=141647"