Difference between revisions of "SJ15971"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-7496 CPD-7496] == * common-name: ** prolycopene * smiles: ** cc(=cccc(=cc=cc(c)=cc=cc(=cc=c...")
 
(Created page with "Category:gene == Gene SJ15971 == * transcription-direction: ** positive * right-end-position: ** 249957 * left-end-position: ** 243782 * centisome-position: ** 84.39627...")
 
(9 intermediate revisions by 4 users not shown)
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-7496 CPD-7496] ==
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== Gene SJ15971 ==
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* common-name:
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* transcription-direction:
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** prolycopene
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** positive
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* smiles:
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* right-end-position:
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** cc(=cccc(=cc=cc(c)=cc=cc(=cc=cc=c(c=cc=c(c)c=cc=c(ccc=c(c)c)c)c)c)c)c
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** 249957
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* inchi-key:
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* left-end-position:
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** oaijszizwzsqbc-byunhuqqsa-n
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** 243782
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* molecular-weight:
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* centisome-position:
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** 536.882
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** 84.39627   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[RXN-8042]]
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) known to produce the compound ==
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== Reaction(s) associated ==
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* [[RXN-11357]]
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* [[PHOSGLYPHOS-RXN]]
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* [[RXN-12242]]
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** Category: [[annotation]]
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== Reaction(s) of unknown directionality ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: common-name=prolycopene}}
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** Category: [[orthology]]
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{{#set: inchi-key=inchikey=oaijszizwzsqbc-byunhuqqsa-n}}
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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{{#set: molecular-weight=536.882}}
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== Pathway(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY66-399]]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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* [[GLUCONEO-PWY]]
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** '''12''' reactions found over '''13''' reactions in the full pathway
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* [[P124-PWY]]
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** '''12''' reactions found over '''15''' reactions in the full pathway
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* [[CALVIN-PWY]]
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** '''12''' reactions found over '''13''' reactions in the full pathway
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* [[P185-PWY]]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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* [[P122-PWY]]
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** '''16''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-5484]]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-1042]]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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* [[GLYCOLYSIS]]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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* [[ANAGLYCOLYSIS-PWY]]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7003]]
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** '''8''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6901]]
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** '''10''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6886]]
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** '''8''' reactions found over '''5''' reactions in the full pathway
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* [[SUCSYN-PWY]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=249957}}
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{{#set: left-end-position=243782}}
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{{#set: centisome-position=84.39627    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=1}}
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{{#set: nb pathway associated=14}}

Latest revision as of 11:03, 18 March 2021

Gene SJ15971

  • transcription-direction:
    • positive
  • right-end-position:
    • 249957
  • left-end-position:
    • 243782
  • centisome-position:
    • 84.39627

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • P124-PWY
    • 12 reactions found over 15 reactions in the full pathway
  • CALVIN-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • P122-PWY
    • 16 reactions found over 18 reactions in the full pathway
  • PWY-5484
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-7003
    • 8 reactions found over 6 reactions in the full pathway
  • PWY-6901
    • 10 reactions found over 8 reactions in the full pathway
  • PWY-6886
    • 8 reactions found over 5 reactions in the full pathway
  • SUCSYN-PWY
    • 6 reactions found over 7 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ15971&oldid=132793"