Difference between revisions of "SJ04004"
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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HOMOGENTISATE HOMOGENTISATE] == * common-name: ** homogentisate * smiles: ** c1(c(=cc(=c(c=1)o)...") |
(Created page with "Category:gene == Gene SJ04004 == * transcription-direction: ** negative * right-end-position: ** 388870 * left-end-position: ** 359555 * centisome-position: ** 69.34322...") |
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− | [[Category: | + | [[Category:gene]] |
− | == | + | == Gene SJ04004 == |
− | * | + | * transcription-direction: |
− | ** | + | ** negative |
− | * | + | * right-end-position: |
− | ** | + | ** 388870 |
− | * | + | * left-end-position: |
− | ** | + | ** 359555 |
− | * | + | * centisome-position: |
− | ** | + | ** 69.34322 |
− | == | + | == Organism(s) associated with this gene == |
− | * [[ | + | * [[S.japonica_carotenoid_curated]] |
− | * [[ | + | == Reaction(s) associated == |
− | * [[ | + | * [[PEPCARBOX-RXN]] |
− | + | ** Category: [[annotation]] | |
− | * [[ | + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
− | * [[ | + | ** Category: [[orthology]] |
− | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | |
− | {{#set: | + | * [[PPC]] |
− | {{#set: | + | ** Category: [[orthology]] |
− | {{#set: | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
+ | == Pathway(s) associated == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * [[PWY-241]] | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-5913]] | ||
+ | ** '''10''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6142]] | ||
+ | ** '''10''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[P23-PWY]] | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWYQT-4429]] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-6146]] | ||
+ | ** '''9''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[FERMENTATION-PWY]] | ||
+ | ** '''11''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[PWY-7124]] | ||
+ | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6549]] | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-1622]] | ||
+ | ** '''6''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-7117]] | ||
+ | ** '''10''' reactions found over '''14''' reactions in the full pathway | ||
+ | * [[PWY-7115]] | ||
+ | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
+ | </div> | ||
+ | {{#set: transcription-direction=negative}} | ||
+ | {{#set: right-end-position=388870}} | ||
+ | {{#set: left-end-position=359555}} | ||
+ | {{#set: centisome-position=69.34322 }} | ||
+ | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
+ | {{#set: nb reaction associated=2}} | ||
+ | {{#set: nb pathway associated=12}} |
Latest revision as of 11:03, 18 March 2021
Contents
Gene SJ04004
- transcription-direction:
- negative
- right-end-position:
- 388870
- left-end-position:
- 359555
- centisome-position:
- 69.34322
Organism(s) associated with this gene
Reaction(s) associated
- PEPCARBOX-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- PPC
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-241
- 5 reactions found over 7 reactions in the full pathway
- PWY-5913
- 10 reactions found over 8 reactions in the full pathway
- PWY-6142
- 10 reactions found over 13 reactions in the full pathway
- P23-PWY
- 9 reactions found over 12 reactions in the full pathway
- PWYQT-4429
- 2 reactions found over 2 reactions in the full pathway
- PWY-6146
- 9 reactions found over 2 reactions in the full pathway
- FERMENTATION-PWY
- 11 reactions found over 16 reactions in the full pathway
- PWY-7124
- 8 reactions found over 8 reactions in the full pathway
- PWY-6549
- 8 reactions found over 9 reactions in the full pathway
- PWY-1622
- 6 reactions found over 13 reactions in the full pathway
- PWY-7117
- 10 reactions found over 14 reactions in the full pathway
- PWY-7115
- 9 reactions found over 11 reactions in the full pathway