Difference between revisions of "D-OCTOPINE-DEHYDROGENASE-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11667 RXN-11667] == * direction: ** reversible * common-name: ** (s)-3-hydroxybutanoyl-coa dehy...")
(Created page with "Category:reaction == Reaction D-OCTOPINE-DEHYDROGENASE-RXN == * direction: ** left-to-right * common-name: ** d-octopine dehydrogenase * ec-number: ** [http://enzyme.expas...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11667 RXN-11667] ==
+
== Reaction D-OCTOPINE-DEHYDROGENASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** (s)-3-hydroxybutanoyl-coa dehydrogenase
+
** d-octopine dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.150 ec-4.2.1.150]
+
** [http://enzyme.expasy.org/EC/1.5 ec-1.5]
 +
* synonymous:
 +
** d-octopine synthase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[S-3-HYDROXYBUTANOYL-COA]][c] '''<=>''' 1 [[CROTONYL-COA]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[Acceptor]][c] '''+''' 1 [[CPD-309]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ARG]][c] '''+''' 1 [[Donor-H2]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03584]]
+
* Gene: [[SJ15888]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ03913]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07211]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5177]], glutaryl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177]
+
* [[OCTOPINEDEG-PWY]], octopine degradation:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate: [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6583]], pyruvate fermentation to butanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6583 PWY-6583]
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6883]], pyruvate fermentation to butanol II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6883 PWY-6883]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789]
 
−
** '''8''' reactions found over '''18''' reactions in the full pathway
 
−
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
 
−
** '''7''' reactions found over '''11''' reactions in the full pathway
 
−
* [[P3-PWY]], gallate degradation III (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P3-PWY P3-PWY]
 
−
** '''3''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401]
 
−
** '''6''' reactions found over '''15''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR115810
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26561 26561]
+
* UNIPROT:
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/P0A395 P0A395]
−
** [http://www.genome.jp/dbget-bin/www_bget?R03026 R03026]
+
** [http://www.uniprot.org/uniprot/P0A394 P0A394]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/Q44297 Q44297]
−
{{#set: common-name=(s)-3-hydroxybutanoyl-coa dehydrogenase}}
+
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-4.2.1.150}}
+
{{#set: common-name=d-octopine dehydrogenase}}
−
{{#set: nb gene associated=3}}
+
{{#set: ec-number=ec-1.5}}
−
{{#set: nb pathway associated=9}}
+
{{#set: synonymous=d-octopine synthase}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb gene associated=1}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction D-OCTOPINE-DEHYDROGENASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • d-octopine dehydrogenase
  • ec-number:
  • synonymous:
    • d-octopine synthase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • OCTOPINEDEG-PWY, octopine degradation:
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links






Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=D-OCTOPINE-DEHYDROGENASE-RXN&oldid=140738"