Difference between revisions of "SJ20499"

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(Created page with "Category:gene == Gene SJ04418 == * transcription-direction: ** negative * right-end-position: ** 96925 * left-end-position: ** 89463 * centisome-position: ** 83.344666...")
 
(Created page with "Category:gene == Gene SJ20499 == * transcription-direction: ** positive * right-end-position: ** 124407 * left-end-position: ** 118532 * centisome-position: ** 19.179222...")
 
(9 intermediate revisions by 4 users not shown)
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ04418 ==
+
== Gene SJ20499 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 96925
+
** 124407
 
* left-end-position:
 
* left-end-position:
−
** 89463
+
** 118532
 
* centisome-position:
 
* centisome-position:
−
** 83.344666    
+
** 19.179222    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN]]
+
* [[RXN-11834]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[NAPHTHOATE-SYN-RXN]]
+
* [[TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[NPHS]]
+
{{#set: transcription-direction=positive}}
−
** Category: [[orthology]]
+
{{#set: right-end-position=124407}}
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
{{#set: left-end-position=118532}}
−
* [[RXN-13721]]
+
{{#set: centisome-position=19.179222   }}
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-6384]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
== Pathway(s) associated ==
 
−
* [[VALDEG-PWY]]
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5837]]
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-3941]]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7574]]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=96925}}
 
−
{{#set: left-end-position=89463}}
 
−
{{#set: centisome-position=83.344666   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=5}}
+
{{#set: nb reaction associated=2}}
−
{{#set: nb pathway associated=4}}
 

Latest revision as of 11:06, 18 March 2021

Gene SJ20499

  • transcription-direction:
    • positive
  • right-end-position:
    • 124407
  • left-end-position:
    • 118532
  • centisome-position:
    • 19.179222

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ20499&oldid=134545"