Difference between revisions of "SJ19719"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ22396 == * transcription-direction: ** negative * right-end-position: ** 145060 * left-end-position: ** 138496 * centisome-position: ** 78.11701...")
(Created page with "Category:gene == Gene SJ19719 == * transcription-direction: ** positive * right-end-position: ** 180530 * left-end-position: ** 162989 * centisome-position: ** 73.356346...")
 
(5 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ22396 ==
+
== Gene SJ19719 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 145060
+
** 180530
 
* left-end-position:
 
* left-end-position:
−
** 138496
+
** 162989
 
* centisome-position:
 
* centisome-position:
−
** 78.11701    
+
** 73.356346    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[DIHYDROXYISOVALDEHYDRAT-RXN]]
−
* [[3-ISOPROPYLMALISOM-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[ACONITATEDEHYDR-RXN]]
+
* [[DIHYDROXYMETVALDEHYDRAT-RXN]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[ACONITATEHYDR-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[IMDHT_LPAREN_3c2hmp_RPAREN_]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[R-2-METHYLMALATE-DEHYDRATASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-13163]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14047]]
+
* [[PGLUCONDEHYDRAT-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-8991]]
+
* [[RXN-11717]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[VALSYN-PWY]]
−
* [[LEUSYN-PWY]]
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY-7111]]
−
* [[PWY-6871]]
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
* [[PWY-5103]]
−
* [[TCA]]
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
* [[ILEUSYN-PWY]]
−
* [[PWY-6549]]
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5392]]
 
−
** '''6''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5690]]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[P105-PWY]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[REDCITCYC]]
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY66-398]]
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7254]]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6969]]
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]]
 
−
** '''11''' reactions found over '''16''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5750]]
 
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5913]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[P23-PWY]]
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7124]]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6728]]
 
−
** '''11''' reactions found over '''19''' reactions in the full pathway
 
 
* [[PWY-5101]]
 
* [[PWY-5101]]
 
** '''4''' reactions found over '''8''' reactions in the full pathway
 
** '''4''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-7698]]
+
* [[PWY-5104]]
−
** '''1''' reactions found over '''13''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
</div>
+
* [[ENTNER-DOUDOROFF-PWY]]
−
{{#set: transcription-direction=negative}}
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
{{#set: right-end-position=145060}}
+
* [[PWY-6627]]
−
{{#set: left-end-position=138496}}
+
** '''3''' reactions found over '''15''' reactions in the full pathway
−
{{#set: centisome-position=78.11701   }}
+
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=180530}}
 +
{{#set: left-end-position=162989}}
 +
{{#set: centisome-position=73.356346   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=8}}
+
{{#set: nb reaction associated=4}}
−
{{#set: nb pathway associated=20}}
+
{{#set: nb pathway associated=8}}

Latest revision as of 11:01, 18 March 2021

Gene SJ19719

  • transcription-direction:
    • positive
  • right-end-position:
    • 180530
  • left-end-position:
    • 162989
  • centisome-position:
    • 73.356346

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • VALSYN-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7111
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5103
    • 3 reactions found over 7 reactions in the full pathway
  • ILEUSYN-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-5101
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-5104
    • 2 reactions found over 6 reactions in the full pathway
  • ENTNER-DOUDOROFF-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6627
    • 3 reactions found over 15 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ19719&oldid=131948"