Difference between revisions of "SJ12567"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ19607 == * transcription-direction: ** negative * right-end-position: ** 184873 * left-end-position: ** 179088 * centisome-position: ** 79.86835...")
 
(Created page with "Category:gene == Gene SJ12567 == * transcription-direction: ** positive * right-end-position: ** 305312 * left-end-position: ** 275849 * centisome-position: ** 77.12044...")
 
(9 intermediate revisions by 4 users not shown)
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ19607 ==
+
== Gene SJ12567 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 184873
+
** 305312
 
* left-end-position:
 
* left-end-position:
−
** 179088
+
** 275849
 
* centisome-position:
 
* centisome-position:
−
** 79.86835    
+
** 77.12044    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[2.7.10.1-RXN]]
+
* [[ARACHIDONATE-5-LIPOXYGENASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[2.7.12.1-RXN]]
+
* [[LIPOXYGENASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[2.7.12.2-RXN]]
+
* [[RXN-1321]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[PROTEIN-KINASE-RXN]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-13395]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-8497]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14906]]
+
* [[RXN-8647]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16317]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
</div>
 
</div>
−
{{#set: transcription-direction=negative}}
+
== Pathway(s) associated ==
−
{{#set: right-end-position=184873}}
+
* [[PWY66-375]]
−
{{#set: left-end-position=179088}}
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
{{#set: centisome-position=79.86835   }}
+
* [[PWY-5410]]
 +
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5409]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-735]]
 +
** '''16''' reactions found over '''19''' reactions in the full pathway
 +
* [[PWY66-392]]
 +
** '''1''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6917]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5406]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5407]]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5408]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=305312}}
 +
{{#set: left-end-position=275849}}
 +
{{#set: centisome-position=77.12044   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: nb reaction associated=6}}
 
{{#set: nb reaction associated=6}}
 +
{{#set: nb pathway associated=9}}

Latest revision as of 11:08, 18 March 2021

Gene SJ12567

  • transcription-direction:
    • positive
  • right-end-position:
    • 305312
  • left-end-position:
    • 275849
  • centisome-position:
    • 77.12044

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY66-375
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5410
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-5409
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-735
    • 16 reactions found over 19 reactions in the full pathway
  • PWY66-392
    • 1 reactions found over 11 reactions in the full pathway
  • PWY-6917
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5406
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5407
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-5408
    • 1 reactions found over 4 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ12567&oldid=135578"