Difference between revisions of "SJ21389"

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(Created page with "Category:gene == Gene SJ08179 == * transcription-direction: ** negative * right-end-position: ** 442276 * left-end-position: ** 434592 * centisome-position: ** 97.71844...")
(Created page with "Category:gene == Gene SJ21389 == * transcription-direction: ** positive * right-end-position: ** 75058 * left-end-position: ** 64341 * centisome-position: ** 33.183937...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ08179 ==
+
== Gene SJ21389 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 442276
+
** 75058
 
* left-end-position:
 
* left-end-position:
−
** 434592
+
** 64341
 
* centisome-position:
 
* centisome-position:
−
** 97.71844    
+
** 33.183937    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
−
* [[G6PI]]
+
** Category: [[annotation]]
−
** Category: [[orthology]]
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* [[PHOSPHATIDATE-PHOSPHATASE-RXN]]
−
* [[GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN]]
+
** Category: [[annotation]]
−
** Category: [[orthology]]
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* [[RXN-11277]]
−
* [[PGIA]]
+
** Category: [[annotation]]
−
** Category: [[orthology]]
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* [[RXN-16030]]
−
* [[PGIAh]]
+
** Category: [[annotation]]
−
** Category: [[orthology]]
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* [[RXN-16121]]
−
* [[PGIB]]
+
** Category: [[annotation]]
−
** Category: [[orthology]]
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* [[RXN-17730]]
−
* [[PGIBh]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[PGLUCISOM-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[TRIGLSYN-PWY]]
−
* [[PWY-6142]]
 
−
** '''10''' reactions found over '''13''' reactions in the full pathway
 
−
* [[SUCSYN-PWY]]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5514]]
 
 
** '''5''' reactions found over '''7''' reactions in the full pathway
 
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7385]]
+
* [[PWY-7039]]
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-3801]]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-621]]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[P122-PWY]]
 
−
** '''16''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-7347]]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[P341-PWY]]
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLYCOLYSIS]]
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[ANAGLYCOLYSIS-PWY]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY66-399]]
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5384]]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5659]]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[RUMP-PWY]]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6981]]
 
−
** '''4''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6992]]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[UDPNAGSYN-PWY]]
 
 
** '''4''' reactions found over '''5''' reactions in the full pathway
 
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[P124-PWY]]
+
* [[PWY-6453]]
−
** '''12''' reactions found over '''15''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
* [[GLUCONEO-PWY]]
+
* [[PWY-7782]]
−
** '''12''' reactions found over '''13''' reactions in the full pathway
+
** '''11''' reactions found over '''16''' reactions in the full pathway
−
* [[PWY-622]]
+
{{#set: transcription-direction=positive}}
−
** '''2''' reactions found over '''10''' reactions in the full pathway
+
{{#set: right-end-position=75058}}
−
* [[PWY-5054]]
+
{{#set: left-end-position=64341}}
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
{{#set: centisome-position=33.183937   }}
−
* [[PWY-7238]]
 
−
** '''5''' reactions found over '''8''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=442276}}
 
−
{{#set: left-end-position=434592}}
 
−
{{#set: centisome-position=97.71844   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=7}}
+
{{#set: nb reaction associated=6}}
−
{{#set: nb pathway associated=23}}
+
{{#set: nb pathway associated=4}}

Latest revision as of 11:04, 18 March 2021

Gene SJ21389

  • transcription-direction:
    • positive
  • right-end-position:
    • 75058
  • left-end-position:
    • 64341
  • centisome-position:
    • 33.183937

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • TRIGLSYN-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7039
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6453
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-7782
    • 11 reactions found over 16 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ21389&oldid=133246"