Difference between revisions of "SJ07665"
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(Created page with "Category:gene == Gene SJ10845 == * transcription-direction: ** positive * right-end-position: ** 350718 * left-end-position: ** 343313 * centisome-position: ** 89.58757...") |
(Created page with "Category:gene == Gene SJ07665 == * transcription-direction: ** negative * right-end-position: ** 198751 * left-end-position: ** 179273 * centisome-position: ** 39.95805...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ07665 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 198751 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 179273 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 39.95805 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | * [[GAPDH_]] |
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[GAPOXNPHOSPHN-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[TRIOSEPISOMERIZATION-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | {{#set: transcription-direction= | + | ** Category: [[orthology]] |
− | {{#set: right-end-position= | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | {{#set: left-end-position= | + | == Pathway(s) associated == |
− | {{#set: centisome-position= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[GLUCONEO-PWY]] | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[P124-PWY]] | ||
+ | ** '''12''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[P185-PWY]] | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[P122-PWY]] | ||
+ | ** '''16''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY-5484]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-1042]] | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[GLYCOLYSIS]] | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[ANAGLYCOLYSIS-PWY]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[SUCSYN-PWY]] | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY66-399]] | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-6901]] | ||
+ | ** '''10''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7003]] | ||
+ | ** '''8''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[CALVIN-PWY]] | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[P341-PWY]] | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-6142]] | ||
+ | ** '''10''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY66-373]] | ||
+ | ** '''3''' reactions found over '''5''' reactions in the full pathway | ||
+ | </div> | ||
+ | {{#set: transcription-direction=negative}} | ||
+ | {{#set: right-end-position=198751}} | ||
+ | {{#set: left-end-position=179273}} | ||
+ | {{#set: centisome-position=39.95805 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
+ | {{#set: nb pathway associated=16}} |
Latest revision as of 11:07, 18 March 2021
Contents
Gene SJ07665
- transcription-direction:
- negative
- right-end-position:
- 198751
- left-end-position:
- 179273
- centisome-position:
- 39.95805
Organism(s) associated with this gene
Reaction(s) associated
- GAPDH_
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- GAPOXNPHOSPHN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- TRIOSEPISOMERIZATION-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- GLUCONEO-PWY
- 12 reactions found over 13 reactions in the full pathway
- P124-PWY
- 12 reactions found over 15 reactions in the full pathway
- P185-PWY
- 11 reactions found over 12 reactions in the full pathway
- P122-PWY
- 16 reactions found over 18 reactions in the full pathway
- PWY-5484
- 10 reactions found over 11 reactions in the full pathway
- PWY-1042
- 9 reactions found over 10 reactions in the full pathway
- GLYCOLYSIS
- 11 reactions found over 12 reactions in the full pathway
- ANAGLYCOLYSIS-PWY
- 10 reactions found over 11 reactions in the full pathway
- SUCSYN-PWY
- 6 reactions found over 7 reactions in the full pathway
- PWY66-399
- 11 reactions found over 12 reactions in the full pathway
- PWY-6901
- 10 reactions found over 8 reactions in the full pathway
- PWY-7003
- 8 reactions found over 6 reactions in the full pathway
- CALVIN-PWY
- 12 reactions found over 13 reactions in the full pathway
- P341-PWY
- 6 reactions found over 10 reactions in the full pathway
- PWY-6142
- 10 reactions found over 13 reactions in the full pathway
- PWY66-373
- 3 reactions found over 5 reactions in the full pathway