Difference between revisions of "SJ13560"

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(Created page with "Category:gene == Gene SJ13180 == * transcription-direction: ** positive * right-end-position: ** 77031 * left-end-position: ** 66996 * centisome-position: ** 19.427013...")
(Created page with "Category:gene == Gene SJ13560 == * transcription-direction: ** positive * right-end-position: ** 188391 * left-end-position: ** 173065 * centisome-position: ** 51.871777...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ13180 ==
+
== Gene SJ13560 ==
 
* transcription-direction:
 
* transcription-direction:
 
** positive
 
** positive
 
* right-end-position:
 
* right-end-position:
−
** 77031
+
** 188391
 
* left-end-position:
 
* left-end-position:
−
** 66996
+
** 173065
 
* centisome-position:
 
* centisome-position:
−
** 19.427013    
+
** 51.871777    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[F16ALDOLASE-RXN]]
−
* [[1.1.1.39-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[4.1.3.17-RXN]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-8631]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[ADOMET-DMK-METHYLTRANSFER-RXN]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[MALIC-NADP-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[OXALODECARB-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-12074]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-2464]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PWY-7118]]
+
* [[CALVIN-PWY]]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
 
* [[GLUCONEO-PWY]]
 
* [[GLUCONEO-PWY]]
 
** '''12''' reactions found over '''13''' reactions in the full pathway
 
** '''12''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-7115]]
+
* [[PWY-7385]]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[P341-PWY]]
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLYCOLYSIS]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY66-399]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-1042]]
 
** '''9''' reactions found over '''10''' reactions in the full pathway
 
** '''9''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-7686]]
+
* [[SUCSYN-PWY]]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-3641]]
+
* [[P185-PWY]]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-7384]]
+
* [[PWY-1861]]
−
** '''6''' reactions found over '''10''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7701]]
+
* [[PWY-5484]]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
* [[MENAQUINONESYN-PWY]]
+
* [[PWY-6142]]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''10''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-7117]]
+
* [[PWY66-373]]
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-241]]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[P184-PWY]]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6339]]
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
* [[METHYLGALLATE-DEGRADATION-PWY]]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[GALLATE-DEGRADATION-II-PWY]]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[GALLATE-DEGRADATION-I-PWY]]
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
 
</div>
 
</div>
 
{{#set: transcription-direction=positive}}
 
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=77031}}
+
{{#set: right-end-position=188391}}
−
{{#set: left-end-position=66996}}
+
{{#set: left-end-position=173065}}
−
{{#set: centisome-position=19.427013   }}
+
{{#set: centisome-position=51.871777   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=7}}
+
{{#set: nb reaction associated=2}}
−
{{#set: nb pathway associated=15}}
+
{{#set: nb pathway associated=14}}

Latest revision as of 11:07, 18 March 2021

Gene SJ13560

  • transcription-direction:
    • positive
  • right-end-position:
    • 188391
  • left-end-position:
    • 173065
  • centisome-position:
    • 51.871777

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • CALVIN-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-7385
    • 7 reactions found over 9 reactions in the full pathway
  • P341-PWY
    • 6 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • SUCSYN-PWY
    • 6 reactions found over 7 reactions in the full pathway
  • P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-5484
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • PWY66-373
    • 3 reactions found over 5 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ13560&oldid=134803"