Difference between revisions of "RXN-17120"

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(Created page with "Category:reaction == Reaction RXNARA-8002 == * direction: ** left-to-right * common-name: ** phytoene synthase * synonymous: ** geranylgeranyl-diphosphate geranylgeranyltr...")
(Created page with "Category:reaction == Reaction RXN-17120 == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.320 ec-2.1.1.320] == Reaction formula == * 1 Pro...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction RXNARA-8002 ==
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== Reaction RXN-17120 ==
 
* direction:
 
* direction:
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** left-to-right
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** reversible
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* common-name:
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* ec-number:
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** phytoene synthase
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** [http://enzyme.expasy.org/EC/2.1.1.320 ec-2.1.1.320]
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* synonymous:
 
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** geranylgeranyl-diphosphate geranylgeranyltransferase
 
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** psase
 
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** prephytoene-diphosphate synthase
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[CPD-464]][c] '''=>''' 1 [[CPD-12321]][c] '''+''' 1 [[PPI]][c]
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* 1 [[Protein-L-Arginines]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''<=>''' 2 [[ADENOSYL-HOMO-CYS]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Protein-N-Nprime-omega-dimethyl-arginine]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[SJ02885]]
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* Gene: [[SJ18917]]
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** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02158]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-5942]], trans-lycopene biosynthesis I:
 
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** '''2''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
 
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** '''8''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-6287]], neurosporene biosynthesis:
 
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** '''2''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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* RHEA:
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* METANETX-RXN : MNXR120671
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34480 34480]
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{{#set: direction=reversible}}
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* LIGAND-RXN:
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{{#set: ec-number=ec-2.1.1.320}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270]
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{{#set: nb gene associated=2}}
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{{#set: direction=left-to-right}}
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{{#set: nb pathway associated=0}}
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{{#set: common-name=phytoene synthase}}
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{{#set: reconstruction category=annotation}}
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{{#set: synonymous=geranylgeranyl-diphosphate geranylgeranyltransferase|psase|prephytoene-diphosphate synthase}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: nb gene associated=1}}
 
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{{#set: nb pathway associated=3}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction RXN-17120

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR120671





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