Difference between revisions of "AGMATIN-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction 2.3.1.91-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.91 ec-2.3.1.91] == Reaction formula == * 1 [...")
(Created page with "Category:reaction == Reaction AGMATIN-RXN == * direction: ** left-to-right * common-name: ** agmatinase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.3.11 ec-3.5.3.11]...")
 
(5 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.3.1.91-RXN ==
+
== Reaction AGMATIN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** agmatinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.91 ec-2.3.1.91]
+
** [http://enzyme.expasy.org/EC/3.5.3.11 ec-3.5.3.11]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[1-O-SINAPOYL-BETA-D-GLUCOSE]][c] '''+''' 1 [[CHOLINE]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[O-SINAPOYLCHOLINE]][c]
+
* 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PUTRESCINE]][c] '''+''' 1 [[UREA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ01793]]
+
* Gene: [[SJ00773]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ17115]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-3301]], sinapate ester biosynthesis:
+
* [[PWY-6305]], superpathway of putrescine biosynthesis:
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway):
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-40]], putrescine biosynthesis I:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR95554
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12025 12025]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13929 13929]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03075 R03075]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01157 R01157]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P60654 P60654]
 +
** [http://www.uniprot.org/uniprot/P60653 P60653]
 +
** [http://www.uniprot.org/uniprot/P60651 P60651]
 +
** [http://www.uniprot.org/uniprot/Q57757 Q57757]
 +
** [http://www.uniprot.org/uniprot/P73270 P73270]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-2.3.1.91}}
+
{{#set: common-name=agmatinase}}
−
{{#set: nb gene associated=2}}
+
{{#set: ec-number=ec-3.5.3.11}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=1}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction AGMATIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • agmatinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6305, superpathway of putrescine biosynthesis:
    • 4 reactions found over n.a reactions in the full pathway
  • PWY0-823, L-arginine degradation III (arginine decarboxylase/agmatinase pathway):
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-40, putrescine biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=AGMATIN-RXN&oldid=139953"