Difference between revisions of "ACONITATEHYDR-RXN"
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(Created page with "Category:reaction == Reaction APIGNAR-RXN == * direction: ** left-to-right * common-name: ** naringenin chalcone isomerase ** chalcone isomerase * ec-number: ** [http://en...") |
(Created page with "Category:reaction == Reaction ACONITATEHYDR-RXN == * direction: ** reversible * common-name: ** cis-aconitate hydratase ** d-threo-isocitrate hydro-lyase (cis-aconitate-fo...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction ACONITATEHYDR-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** cis-aconitate hydratase |
− | ** | + | ** d-threo-isocitrate hydro-lyase (cis-aconitate-forming) |
− | |||
− | |||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ18471]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ22396]] |
− | |||
− | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''5''' reactions found over ''' | + | * [[PWY-6549]], L-glutamine biosynthesis III: |
− | * [[PWY- | + | ** '''8''' reactions found over '''9''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-5392]], reductive TCA cycle II: |
− | * [[PWY- | + | ** '''6''' reactions found over '''12''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-5690]], TCA cycle II (plants and fungi): |
− | * [[PWY- | + | ** '''8''' reactions found over '''9''' reactions in the full pathway |
− | ** ''' | + | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): |
+ | ** '''10''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[TCA]], TCA cycle I (prokaryotic): | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[REDCITCYC]], TCA cycle VI (Helicobacter): | ||
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY66-398]], TCA cycle III (animals): | ||
+ | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-7254]], TCA cycle VII (acetate-producers): | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6969]], TCA cycle V (2-oxoglutarate synthase): | ||
+ | ** '''10''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): | ||
+ | ** '''10''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[FERMENTATION-PWY]], mixed acid fermentation: | ||
+ | ** '''11''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[P23-PWY]], reductive TCA cycle I: | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-7124]], ethene biosynthesis V (engineered): | ||
+ | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6728]], methylaspartate cycle: | ||
+ | ** '''11''' reactions found over '''19''' reactions in the full pathway | ||
+ | * [[GLYOXYLATE-BYPASS]], glyoxylate cycle: | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
+ | * METANETX-RXN : MNXR115664 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22147 22147] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01900 R01900] |
− | + | {{#set: direction=reversible}} | |
− | + | {{#set: common-name=d-threo-isocitrate hydro-lyase (cis-aconitate-forming)|cis-aconitate hydratase}} | |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | {{#set: direction= | ||
− | {{#set: common-name= | ||
− | |||
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=15}} |
− | {{#set: reconstruction category=annotation | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Latest revision as of 11:25, 18 March 2021
Contents
Reaction ACONITATEHYDR-RXN
- direction:
- reversible
- common-name:
- cis-aconitate hydratase
- d-threo-isocitrate hydro-lyase (cis-aconitate-forming)
Reaction formula
- 1 CIS-ACONITATE[c] + 1 WATER[c] <=> 1 THREO-DS-ISO-CITRATE[c]
Gene(s) associated with this reaction
- Gene: SJ18471
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ22396
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-6549, L-glutamine biosynthesis III:
- 8 reactions found over 9 reactions in the full pathway
- PWY-5392, reductive TCA cycle II:
- 6 reactions found over 12 reactions in the full pathway
- PWY-5690, TCA cycle II (plants and fungi):
- 8 reactions found over 9 reactions in the full pathway
- P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
- 10 reactions found over 9 reactions in the full pathway
- TCA, TCA cycle I (prokaryotic):
- 9 reactions found over 10 reactions in the full pathway
- REDCITCYC, TCA cycle VI (Helicobacter):
- 5 reactions found over 9 reactions in the full pathway
- PWY66-398, TCA cycle III (animals):
- 10 reactions found over 10 reactions in the full pathway
- PWY-7254, TCA cycle VII (acetate-producers):
- 7 reactions found over 9 reactions in the full pathway
- PWY-6969, TCA cycle V (2-oxoglutarate synthase):
- 10 reactions found over 9 reactions in the full pathway
- PWY-5913, partial TCA cycle (obligate autotrophs):
- 10 reactions found over 8 reactions in the full pathway
- FERMENTATION-PWY, mixed acid fermentation:
- 11 reactions found over 16 reactions in the full pathway
- P23-PWY, reductive TCA cycle I:
- 9 reactions found over 12 reactions in the full pathway
- PWY-7124, ethene biosynthesis V (engineered):
- 8 reactions found over 8 reactions in the full pathway
- PWY-6728, methylaspartate cycle:
- 11 reactions found over 19 reactions in the full pathway
- GLYOXYLATE-BYPASS, glyoxylate cycle:
- 6 reactions found over 6 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links