Difference between revisions of "SHIKIMATE-KINASE-RXN"

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(Created page with "Category:reaction == Reaction DIAMINOPIMELATE-DEHYDROGENASE-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1.4.1.16 ec-1.4.1.16] == Reactio...")
(Created page with "Category:reaction == Reaction SHIKIMATE-KINASE-RXN == * direction: ** reversible * common-name: ** shikimate kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.71 e...")
 
(4 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DIAMINOPIMELATE-DEHYDROGENASE-RXN ==
+
== Reaction SHIKIMATE-KINASE-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 +
* common-name:
 +
** shikimate kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.4.1.16 ec-1.4.1.16]
+
** [http://enzyme.expasy.org/EC/2.7.1.71 ec-2.7.1.71]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[L-ALPHA-AMINO-EPSILON-KETO-PIMELATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[SHIKIMATE]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SHIKIMATE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ04949]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05909]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10493]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2942]], L-lysine biosynthesis III:
+
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''6''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[previous_meneco]]; tool: [[curation]]; comment: reaction added with meneco (previous version)
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR104379
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13564 13564]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13124 13124]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02755 R02755]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02412 R02412]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P04964 P04964]
+
** [http://www.uniprot.org/uniprot/P0A6D7 P0A6D7]
 +
** [http://www.uniprot.org/uniprot/Q9PIB5 Q9PIB5]
 +
** [http://www.uniprot.org/uniprot/P07547 P07547]
 +
** [http://www.uniprot.org/uniprot/P08566 P08566]
 +
** [http://www.uniprot.org/uniprot/P43880 P43880]
 +
** [http://www.uniprot.org/uniprot/P63600 P63600]
 +
** [http://www.uniprot.org/uniprot/Q9CEU1 Q9CEU1]
 +
** [http://www.uniprot.org/uniprot/P37944 P37944]
 +
** [http://www.uniprot.org/uniprot/P0A6E1 P0A6E1]
 +
** [http://www.uniprot.org/uniprot/P10880 P10880]
 +
** [http://www.uniprot.org/uniprot/Q00497 Q00497]
 +
** [http://www.uniprot.org/uniprot/P34003 P34003]
 +
** [http://www.uniprot.org/uniprot/P43906 P43906]
 +
** [http://www.uniprot.org/uniprot/P72796 P72796]
 +
</div>
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: ec-number=ec-1.4.1.16}}
+
{{#set: common-name=shikimate kinase}}
−
{{#set: nb gene associated=0}}
+
{{#set: ec-number=ec-2.7.1.71}}
 +
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
{{#set: reconstruction comment=reaction added with meneco (previous version)}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=previous_meneco}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction SHIKIMATE-KINASE-RXN

  • direction:
    • reversible
  • common-name:
    • shikimate kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate:
    • 6 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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