Difference between revisions of "PEPCARBOX-RXN"
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(Created page with "Category:reaction == Reaction ARGINASE-RXN == * direction: ** reversible * common-name: ** arginase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.3.1 ec-3.5.3.1] == Rea...") |
(Created page with "Category:reaction == Reaction PEPCARBOX-RXN == * direction: ** left-to-right * common-name: ** phosphoenolpyruvate carboxylase * ec-number: ** [http://enzyme.expasy.org/EC...") |
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(4 intermediate revisions by 2 users not shown) | |||
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction PEPCARBOX-RXN == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** phosphoenolpyruvate carboxylase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/4.1.1.31 ec-4.1.1.31] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[HCO3]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''=>''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[Pi]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ04004]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | |||
− | |||
− | |||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type: | ||
** '''5''' reactions found over '''7''' reactions in the full pathway | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): |
− | ** ''' | + | ** '''10''' reactions found over '''8''' reactions in the full pathway |
− | * [[ | + | * [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): |
+ | ** '''10''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[P23-PWY]], reductive TCA cycle I: | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWYQT-4429]], CO2 fixation into oxaloacetate (anaplerotic): | ||
** '''2''' reactions found over '''2''' reactions in the full pathway | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-6146]], Methanobacterium thermoautotrophicum biosynthetic metabolism: |
− | ** ''' | + | ** '''9''' reactions found over '''2''' reactions in the full pathway |
− | * [[ | + | * [[FERMENTATION-PWY]], mixed acid fermentation: |
− | ** ''' | + | ** '''11''' reactions found over '''16''' reactions in the full pathway |
− | * [[ | + | * [[PWY-7124]], ethene biosynthesis V (engineered): |
− | ** ''' | + | ** '''8''' reactions found over '''8''' reactions in the full pathway |
− | * [[ | + | * [[PWY-6549]], L-glutamine biosynthesis III: |
− | ** ''' | + | ** '''8''' reactions found over '''9''' reactions in the full pathway |
+ | * [[PWY-1622]], formaldehyde assimilation I (serine pathway): | ||
+ | ** '''6''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: | ||
+ | ** '''10''' reactions found over '''14''' reactions in the full pathway | ||
+ | * [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: | ||
+ | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * | + | * METANETX-RXN : MNXR116110 |
− | |||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00345 R00345] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P28594 P28594] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P43920 P43920] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P29195 P29195] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P51059 P51059] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P00864 P00864] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P12880 P12880] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P10490 P10490] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P16097 P16097] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P27154 P27154] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P06516 P06516] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q43267 Q43267] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q41197 Q41197] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P29194 P29194] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P30694 P30694] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P15804 P15804] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q43268 Q43268] |
+ | ** [http://www.uniprot.org/uniprot/Q01647 Q01647] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01648 Q01648] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02735 Q02735] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02909 Q02909] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42730 Q42730] | ||
+ | ** [http://www.uniprot.org/uniprot/Q41198 Q41198] | ||
+ | ** [http://www.uniprot.org/uniprot/P51063 P51063] | ||
+ | ** [http://www.uniprot.org/uniprot/Q40103 Q40103] | ||
+ | ** [http://www.uniprot.org/uniprot/Q40104 Q40104] | ||
+ | ** [http://www.uniprot.org/uniprot/Q40105 Q40105] | ||
+ | ** [http://www.uniprot.org/uniprot/Q40102 Q40102] | ||
+ | ** [http://www.uniprot.org/uniprot/Q41836 Q41836] | ||
+ | ** [http://www.uniprot.org/uniprot/O22118 O22118] | ||
+ | ** [http://www.uniprot.org/uniprot/O22119 O22119] | ||
+ | ** [http://www.uniprot.org/uniprot/O48623 O48623] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42634 Q42634] | ||
+ | ** [http://www.uniprot.org/uniprot/O23946 O23946] | ||
+ | ** [http://www.uniprot.org/uniprot/O23947 O23947] | ||
+ | ** [http://www.uniprot.org/uniprot/Q84VW9 Q84VW9] | ||
</div> | </div> | ||
− | {{#set: direction= | + | {{#set: direction=left-to-right}} |
− | {{#set: common-name= | + | {{#set: common-name=phosphoenolpyruvate carboxylase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-4.1.1.31}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=1}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=12}} |
− | {{#set: reconstruction category=annotation | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Latest revision as of 11:21, 18 March 2021
Contents
Reaction PEPCARBOX-RXN
- direction:
- left-to-right
- common-name:
- phosphoenolpyruvate carboxylase
- ec-number:
Reaction formula
- 1 HCO3[c] + 1 PHOSPHO-ENOL-PYRUVATE[c] => 1 OXALACETIC_ACID[c] + 1 Pi[c]
Gene(s) associated with this reaction
- Gene: SJ04004
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type:
- 5 reactions found over 7 reactions in the full pathway
- PWY-5913, partial TCA cycle (obligate autotrophs):
- 10 reactions found over 8 reactions in the full pathway
- PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum):
- 10 reactions found over 13 reactions in the full pathway
- P23-PWY, reductive TCA cycle I:
- 9 reactions found over 12 reactions in the full pathway
- PWYQT-4429, CO2 fixation into oxaloacetate (anaplerotic):
- 2 reactions found over 2 reactions in the full pathway
- PWY-6146, Methanobacterium thermoautotrophicum biosynthetic metabolism:
- 9 reactions found over 2 reactions in the full pathway
- FERMENTATION-PWY, mixed acid fermentation:
- 11 reactions found over 16 reactions in the full pathway
- PWY-7124, ethene biosynthesis V (engineered):
- 8 reactions found over 8 reactions in the full pathway
- PWY-6549, L-glutamine biosynthesis III:
- 8 reactions found over 9 reactions in the full pathway
- PWY-1622, formaldehyde assimilation I (serine pathway):
- 6 reactions found over 13 reactions in the full pathway
- PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type:
- 10 reactions found over 14 reactions in the full pathway
- PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type:
- 9 reactions found over 11 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links