Difference between revisions of "MALATE-DEHYDROGENASE-NADP+-RXN"

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(Created page with "Category:reaction == Reaction RIB5PISOM-RXN == * direction: ** reversible * common-name: ** ribose-5-phosphate isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3.1...")
(Created page with "Category:reaction == Reaction MALATE-DEHYDROGENASE-NADP+-RXN == * direction: ** left-to-right * common-name: ** malate dehydrogenase (nadp+) * ec-number: ** [http://enzyme...")
 
(4 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RIB5PISOM-RXN ==
+
== Reaction MALATE-DEHYDROGENASE-NADP+-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** ribose-5-phosphate isomerase
+
** malate dehydrogenase (nadp+)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.3.1.6 ec-5.3.1.6]
+
** [http://enzyme.expasy.org/EC/1.1.1.82 ec-1.1.1.82]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[RIBULOSE-5P]][c]
+
* 1 [[NADPH]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[MAL]][c] '''+''' 1 [[NADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00411]]
+
* Gene: [[SJ05075]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07743]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P124-PWY]], Bifidobacterium shunt:
+
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
−
** '''12''' reactions found over '''15''' reactions in the full pathway
+
** '''10''' reactions found over '''14''' reactions in the full pathway
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
+
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type:
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch):
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5723]], Rubisco shunt:
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR101444
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14660 14660]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01056 R01056]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00343 R00343]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P0A7Z0 P0A7Z0]
+
** [http://www.uniprot.org/uniprot/P15719 P15719]
−
** [http://www.uniprot.org/uniprot/Q9CDI7 Q9CDI7]
+
** [http://www.uniprot.org/uniprot/P17606 P17606]
−
** [http://www.uniprot.org/uniprot/P44725 P44725]
+
** [http://www.uniprot.org/uniprot/Q43830 Q43830]
−
** [http://www.uniprot.org/uniprot/Q58998 Q58998]
+
** [http://www.uniprot.org/uniprot/P37229 P37229]
−
** [http://www.uniprot.org/uniprot/Q9JTM5 Q9JTM5]
+
** [http://www.uniprot.org/uniprot/Q05145 Q05145]
−
** [http://www.uniprot.org/uniprot/Q9PP08 Q9PP08]
+
** [http://www.uniprot.org/uniprot/P21528 P21528]
−
** [http://www.uniprot.org/uniprot/P37351 P37351]
+
** [http://www.uniprot.org/uniprot/P52426 P52426]
−
** [http://www.uniprot.org/uniprot/P74234 P74234]
+
** [http://www.uniprot.org/uniprot/Q08062 Q08062]
−
** [http://www.uniprot.org/uniprot/Q55766 Q55766]
+
** [http://www.uniprot.org/uniprot/P93104 P93104]
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=ribose-5-phosphate isomerase}}
+
{{#set: common-name=malate dehydrogenase (nadp+)}}
−
{{#set: ec-number=ec-5.3.1.6}}
+
{{#set: ec-number=ec-1.1.1.82}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction MALATE-DEHYDROGENASE-NADP+-RXN

  • direction:
    • left-to-right
  • common-name:
    • malate dehydrogenase (nadp+)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type:
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type:
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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