Difference between revisions of "RXN-11667"

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(Created page with "Category:reaction == Reaction RXN-14275 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.m19 ec-1.1.1.m19] == Reaction formula == * 1 ...")
(Created page with "Category:reaction == Reaction RXN-11667 == * direction: ** reversible * common-name: ** (s)-3-hydroxybutanoyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/E...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-14275 ==
+
== Reaction RXN-11667 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** (s)-3-hydroxybutanoyl-coa dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.m19 ec-1.1.1.m19]
+
** [http://enzyme.expasy.org/EC/4.2.1.150 ec-4.2.1.150]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-14916]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CPD0-2106]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[S-3-HYDROXYBUTANOYL-COA]][c] '''<=>''' 1 [[CROTONYL-COA]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ03584]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03913]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07211]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered):
+
* [[PWY-5177]], glutaryl-CoA degradation:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered):
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate:
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6883]], pyruvate fermentation to butanol II (engineered):
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6583]], pyruvate fermentation to butanol I:
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
 +
** '''8''' reactions found over '''18''' reactions in the full pathway
 +
* [[P3-PWY]], gallate degradation III (anaerobic):
 +
** '''3''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate):
 +
** '''6''' reactions found over '''15''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR97883
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31196 31196]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26561 26561]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04745 R04745]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03026 R03026]
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: ec-number=ec-1.1.1.m19}}
+
{{#set: common-name=(s)-3-hydroxybutanoyl-coa dehydrogenase}}
−
{{#set: nb gene associated=0}}
+
{{#set: ec-number=ec-4.2.1.150}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=3}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: nb pathway associated=9}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Latest revision as of 11:18, 18 March 2021

Reaction RXN-11667

  • direction:
    • reversible
  • common-name:
    • (s)-3-hydroxybutanoyl-coa dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5177, glutaryl-CoA degradation:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6863, pyruvate fermentation to hexanol (engineered):
    • 9 reactions found over 11 reactions in the full pathway
  • CENTFERM-PWY, pyruvate fermentation to butanoate:
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-6883, pyruvate fermentation to butanol II (engineered):
    • 5 reactions found over 6 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate):
    • 7 reactions found over 10 reactions in the full pathway
  • PWY-6583, pyruvate fermentation to butanol I:
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle:
    • 8 reactions found over 18 reactions in the full pathway
  • P3-PWY, gallate degradation III (anaerobic):
    • 3 reactions found over 11 reactions in the full pathway
  • PWY-7401, crotonate fermentation (to acetate and cyclohexane carboxylate):
    • 6 reactions found over 15 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR97883
  • RHEA:
  • LIGAND-RXN:





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