Difference between revisions of "3.1.26.3-RXN"
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(Created page with "Category:reaction == Reaction RXN-17786 == * direction: ** left-to-right * common-name: ** 3-hydroxyacyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1...") |
(Created page with "Category:reaction == Reaction 3.1.26.3-RXN == * direction: ** left-to-right * common-name: ** ribonuclease iii ** ribonuclease * ec-number: ** [http://enzyme.expasy.org/EC...") |
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(3 intermediate revisions by 2 users not shown) | |||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction 3.1.26.3-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** ribonuclease iii |
+ | ** ribonuclease | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/3.1.26.3 ec-3.1.26.3] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[RNASE-III-MRNA-PROCESSING-SUBSTRATE]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[RNASE-III-PROCESSING-PRODUCT-MRNA]][c] '''+''' 2 [[mRNA-Fragments]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * Gene: [[ | + | * Gene: [[SJ17141]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ01852]] |
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ15619]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ08973]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ17143]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ08968]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
− | |||
− | |||
− | |||
</div> | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
+ | * METANETX-RXN : MNXR115277 | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PM40 Q9PM40] | ||
+ | ** [http://www.uniprot.org/uniprot/P51833 P51833] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CHD0 Q9CHD0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JVD3 Q9JVD3] | ||
+ | ** [http://www.uniprot.org/uniprot/P44441 P44441] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A7Y0 P0A7Y0] | ||
+ | ** [http://www.uniprot.org/uniprot/P09155 P09155] | ||
+ | ** [http://www.uniprot.org/uniprot/Q52698 Q52698] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49034 Q49034] | ||
+ | ** [http://www.uniprot.org/uniprot/O69469 O69469] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=ribonuclease|ribonuclease iii}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-3.1.26.3}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=6}} |
{{#set: nb pathway associated=0}} | {{#set: nb pathway associated=0}} | ||
− | {{#set: reconstruction category=annotation | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Latest revision as of 11:23, 18 March 2021
Contents
Reaction 3.1.26.3-RXN
- direction:
- left-to-right
- common-name:
- ribonuclease iii
- ribonuclease
- ec-number:
Reaction formula
- 1 RNASE-III-MRNA-PROCESSING-SUBSTRATE[c] + 2 WATER[c] => 1 RNASE-III-PROCESSING-PRODUCT-MRNA[c] + 2 mRNA-Fragments[c]
Gene(s) associated with this reaction
- Gene: SJ17141
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ01852
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ15619
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ08973
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ17143
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ08968
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- METANETX-RXN : MNXR115277
- UNIPROT: