Difference between revisions of "SJ10493"
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(Created page with "Category:gene == Gene SJ07344 == * transcription-direction: ** negative * right-end-position: ** 164518 * left-end-position: ** 129080 * centisome-position: ** 27.849997...") |
(Created page with "Category:gene == Gene SJ10493 == * transcription-direction: ** positive * right-end-position: ** 324933 * left-end-position: ** 321173 * centisome-position: ** 82.587746...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ10493 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 324933 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 321173 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 82.587746 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[2.5.1.19-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[3-DEHYDROQUINATE-DEHYDRATASE-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[3-DEHYDROQUINATE-SYNTHASE-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-7967]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-7968]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[SHIKIMATE-5-DEHYDROGENASE-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[SHIKIMATE-KINASE-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | * [[PWY-6163]] |
− | ** ''' | + | ** '''6''' reactions found over '''5''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6707]] |
− | ** ''' | + | ** '''1''' reactions found over '''3''' reactions in the full pathway |
− | * [[PWY- | + | * [[QUINATEDEG-PWY]] |
− | ** ''' | + | ** '''1''' reactions found over '''3''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6416]] |
− | ** ''' | + | ** '''1''' reactions found over '''3''' reactions in the full pathway |
− | {{#set: transcription-direction= | + | * [[PWY-6164]] |
− | {{#set: right-end-position= | + | ** '''2''' reactions found over '''2''' reactions in the full pathway |
− | {{#set: left-end-position= | + | {{#set: transcription-direction=positive}} |
− | {{#set: centisome-position= | + | {{#set: right-end-position=324933}} |
+ | {{#set: left-end-position=321173}} | ||
+ | {{#set: centisome-position=82.587746 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=7}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=5}} |
Latest revision as of 11:02, 18 March 2021
Contents
Gene SJ10493
- transcription-direction:
- positive
- right-end-position:
- 324933
- left-end-position:
- 321173
- centisome-position:
- 82.587746
Organism(s) associated with this gene
Reaction(s) associated
- 2.5.1.19-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- 3-DEHYDROQUINATE-DEHYDRATASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- 3-DEHYDROQUINATE-SYNTHASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-7967
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-7968
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- SHIKIMATE-5-DEHYDROGENASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- SHIKIMATE-KINASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-6163
- 6 reactions found over 5 reactions in the full pathway
- PWY-6707
- 1 reactions found over 3 reactions in the full pathway
- QUINATEDEG-PWY
- 1 reactions found over 3 reactions in the full pathway
- PWY-6416
- 1 reactions found over 3 reactions in the full pathway
- PWY-6164
- 2 reactions found over 2 reactions in the full pathway