Difference between revisions of "RXN-13805"
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(Created page with "Category:reaction == Reaction RXN-16426 == * direction: ** left-to-right == Reaction formula == * 1 N-ACETYL-D-GLUCOSAMINE-16-BIS-P[c] '''+''' 1 Phosphoacetylglucosa...") |
(Created page with "Category:reaction == Reaction CYSTATHIONINE-BETA-SYNTHASE-RXN == * direction: ** reversible * common-name: ** cystathionine β-synthase * ec-number: ** [http://enzyme....") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction CYSTATHIONINE-BETA-SYNTHASE-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
+ | * common-name: | ||
+ | ** cystathionine β-synthase | ||
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/4.2.1.22 ec-4.2.1.22] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[HOMO-CYS]][c] '''+''' 1 [[SER]][c] '''<=>''' 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ15937]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ20026]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ15938]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[HOMOCYSDEGR-PWY]], L-cysteine biosynthesis III (from L-homocysteine): | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-I9]], L-cysteine biosynthesis VI (from L-methionine): | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-801]], homocysteine and cysteine interconversion: | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | * RHEA: |
− | {{#set: nb gene associated= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10115 10115] |
− | {{#set: nb pathway associated= | + | * LIGAND-RXN: |
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01290 R01290] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P32232 P32232] | ||
+ | ** [http://www.uniprot.org/uniprot/P32582 P32582] | ||
+ | ** [http://www.uniprot.org/uniprot/P35520 P35520] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9YCN5 Q9YCN5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12633 Q12633] | ||
+ | ** [http://www.uniprot.org/uniprot/P72662 P72662] | ||
+ | ** [http://www.uniprot.org/uniprot/O59701 O59701] | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=cystathionine β-synthase}} | ||
+ | {{#set: ec-number=ec-4.2.1.22}} | ||
+ | {{#set: nb gene associated=3}} | ||
+ | {{#set: nb pathway associated=3}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:23, 15 January 2021
Contents
Reaction CYSTATHIONINE-BETA-SYNTHASE-RXN
- direction:
- reversible
- common-name:
- cystathionine β-synthase
- ec-number:
Reaction formula
- 1 HOMO-CYS[c] + 1 SER[c] <=> 1 L-CYSTATHIONINE[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ15937
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ20026
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ15938
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- HOMOCYSDEGR-PWY, L-cysteine biosynthesis III (from L-homocysteine):
- 2 reactions found over 2 reactions in the full pathway
- PWY-I9, L-cysteine biosynthesis VI (from L-methionine):
- 4 reactions found over 5 reactions in the full pathway
- PWY-801, homocysteine and cysteine interconversion:
- 3 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
External links