Difference between revisions of "RXN-5424"
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(Created page with "Category:reaction == Reaction RXN-14198 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.5 ec-3.6.1.5] == Reaction formula == * 1 DCTP...") |
(Created page with "Category:reaction == Reaction DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** dna (cytosine-5-)-methyltransferase * ec-number: **...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** dna (cytosine-5-)-methyltransferase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.1.1.37 ec-2.1.1.37] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[DNA-Cytosines]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[5-Methylcytosine-DNA]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[SJ03848]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ22261]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ09533]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ00246]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ02225]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ11154]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ03795]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ00150]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13682 13682] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P24581 P24581] | ||
+ | ** [http://www.uniprot.org/uniprot/P05102 P05102] | ||
+ | ** [http://www.uniprot.org/uniprot/P05101 P05101] | ||
+ | ** [http://www.uniprot.org/uniprot/P06530 P06530] | ||
+ | ** [http://www.uniprot.org/uniprot/O41165 O41165] | ||
+ | ** [http://www.uniprot.org/uniprot/Q98580 Q98580] | ||
+ | ** [http://www.uniprot.org/uniprot/Q98567 Q98567] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59606 Q59606] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A462 P0A462] | ||
+ | ** [http://www.uniprot.org/uniprot/P71101 P71101] | ||
+ | ** [http://www.uniprot.org/uniprot/P50192 P50192] | ||
+ | ** [http://www.uniprot.org/uniprot/P50185 P50185] | ||
+ | ** [http://www.uniprot.org/uniprot/Q38652 Q38652] | ||
+ | ** [http://www.uniprot.org/uniprot/P52311 P52311] | ||
+ | ** [http://www.uniprot.org/uniprot/P31974 P31974] | ||
+ | ** [http://www.uniprot.org/uniprot/P30774 P30774] | ||
+ | ** [http://www.uniprot.org/uniprot/P23941 P23941] | ||
+ | ** [http://www.uniprot.org/uniprot/P25262 P25262] | ||
+ | ** [http://www.uniprot.org/uniprot/P25267 P25267] | ||
+ | ** [http://www.uniprot.org/uniprot/P25263 P25263] | ||
+ | ** [http://www.uniprot.org/uniprot/P15446 P15446] | ||
+ | ** [http://www.uniprot.org/uniprot/P24600 P24600] | ||
+ | ** [http://www.uniprot.org/uniprot/P23737 P23737] | ||
+ | ** [http://www.uniprot.org/uniprot/P13906 P13906] | ||
+ | ** [http://www.uniprot.org/uniprot/P14243 P14243] | ||
+ | ** [http://www.uniprot.org/uniprot/P14244 P14244] | ||
+ | ** [http://www.uniprot.org/uniprot/P14230 P14230] | ||
+ | ** [http://www.uniprot.org/uniprot/P11409 P11409] | ||
+ | ** [http://www.uniprot.org/uniprot/P10283 P10283] | ||
+ | ** [http://www.uniprot.org/uniprot/P25265 P25265] | ||
+ | ** [http://www.uniprot.org/uniprot/P0AED9 P0AED9] | ||
+ | ** [http://www.uniprot.org/uniprot/P20589 P20589] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02778 Q02778] | ||
+ | ** [http://www.uniprot.org/uniprot/P95820 P95820] | ||
+ | ** [http://www.uniprot.org/uniprot/P70750 P70750] | ||
+ | ** [http://www.uniprot.org/uniprot/P25264 P25264] | ||
+ | ** [http://www.uniprot.org/uniprot/Q47257 Q47257] | ||
+ | ** [http://www.uniprot.org/uniprot/O87740 O87740] | ||
+ | ** [http://www.uniprot.org/uniprot/P43420 P43420] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JWD8 Q9JWD8] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JU80 Q9JU80] | ||
+ | ** [http://www.uniprot.org/uniprot/P08455 P08455] | ||
+ | ** [http://www.uniprot.org/uniprot/P11408 P11408] | ||
+ | ** [http://www.uniprot.org/uniprot/P17044 P17044] | ||
+ | ** [http://www.uniprot.org/uniprot/P19888 P19888] | ||
+ | ** [http://www.uniprot.org/uniprot/P00476 P00476] | ||
+ | ** [http://www.uniprot.org/uniprot/P09915 P09915] | ||
+ | ** [http://www.uniprot.org/uniprot/P68586 P68586] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZLZ0 Q9ZLZ0] | ||
+ | ** [http://www.uniprot.org/uniprot/O24892 O24892] | ||
+ | ** [http://www.uniprot.org/uniprot/P45000 P45000] | ||
+ | ** [http://www.uniprot.org/uniprot/P29567 P29567] | ||
+ | ** [http://www.uniprot.org/uniprot/P25282 P25282] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JQR8 Q9JQR8] | ||
+ | ** [http://www.uniprot.org/uniprot/O25746 O25746] | ||
+ | ** [http://www.uniprot.org/uniprot/P36216 P36216] | ||
+ | ** [http://www.uniprot.org/uniprot/P25283 P25283] | ||
+ | ** [http://www.uniprot.org/uniprot/O23273 O23273] | ||
+ | ** [http://www.uniprot.org/uniprot/Q92072 Q92072] | ||
+ | ** [http://www.uniprot.org/uniprot/P79922 P79922] | ||
+ | ** [http://www.uniprot.org/uniprot/O08431 O08431] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z330 Q9Z330] | ||
+ | ** [http://www.uniprot.org/uniprot/P13864 P13864] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S9I8 Q9S9I8] | ||
+ | ** [http://www.uniprot.org/uniprot/P34881 P34881] | ||
+ | ** [http://www.uniprot.org/uniprot/Q60171 Q60171] | ||
+ | ** [http://www.uniprot.org/uniprot/O65343 O65343] | ||
+ | ** [http://www.uniprot.org/uniprot/O49022 O49022] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9T0I1 Q9T0I1] | ||
+ | ** [http://www.uniprot.org/uniprot/O49889 O49889] | ||
+ | ** [http://www.uniprot.org/uniprot/O42731 O42731] | ||
+ | ** [http://www.uniprot.org/uniprot/O48866 O48866] | ||
+ | ** [http://www.uniprot.org/uniprot/O48867 O48867] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00380 R00380] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: ec-number=ec- | + | {{#set: common-name=dna (cytosine-5-)-methyltransferase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-2.1.1.37}} |
+ | {{#set: nb gene associated=8}} | ||
{{#set: nb pathway associated=0}} | {{#set: nb pathway associated=0}} | ||
− | {{#set: reconstruction category=orthology}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:23, 15 January 2021
Contents
Reaction DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN
- direction:
- left-to-right
- common-name:
- dna (cytosine-5-)-methyltransferase
- ec-number:
Reaction formula
- 1 DNA-Cytosines[c] + 1 S-ADENOSYLMETHIONINE[c] => 1 5-Methylcytosine-DNA[c] + 1 ADENOSYL-HOMO-CYS[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ03848
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ22261
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ09533
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ00246
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ02225
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ11154
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ03795
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ00150
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- RHEA:
- UNIPROT:
- P24581
- P05102
- P05101
- P06530
- O41165
- Q98580
- Q98567
- Q59606
- P0A462
- P71101
- P50192
- P50185
- Q38652
- P52311
- P31974
- P30774
- P23941
- P25262
- P25267
- P25263
- P15446
- P24600
- P23737
- P13906
- P14243
- P14244
- P14230
- P11409
- P10283
- P25265
- P0AED9
- P20589
- Q02778
- P95820
- P70750
- P25264
- Q47257
- O87740
- P43420
- Q9JWD8
- Q9JU80
- P08455
- P11408
- P17044
- P19888
- P00476
- P09915
- P68586
- Q9ZLZ0
- O24892
- P45000
- P29567
- P25282
- Q9JQR8
- O25746
- P36216
- P25283
- O23273
- Q92072
- P79922
- O08431
- Q9Z330
- P13864
- Q9S9I8
- P34881
- Q60171
- O65343
- O49022
- Q9T0I1
- O49889
- O42731
- O48866
- O48867
- LIGAND-RXN: