Difference between revisions of "RXN-11321"
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(Created page with "Category:reaction == Reaction RXN-14026 == * direction: ** left-to-right * common-name: ** cmp phosphatase ** 5'-nucleotidase * ec-number: ** [http://enzyme.expasy.org/EC/...") |
(Created page with "Category:reaction == Reaction INORGPYROPHOSPHAT-RXN == * direction: ** left-to-right * common-name: ** inorganic pyrophosphatase ** inorganic diphosphatase * ec-number: **...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction INORGPYROPHOSPHAT-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** inorganic pyrophosphatase |
− | ** | + | ** inorganic diphosphatase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/3.1. | + | ** [http://enzyme.expasy.org/EC/3.6.1.1 ec-3.6.1.1] |
− | |||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[PPI]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 2 [[Pi]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * Gene: [[ | + | * Gene: [[SJ11426]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ11196]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ06186]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ07746]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ19856]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ19765]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ09890]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ10687]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ17386]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ17098]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ17991]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ21090]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
</div> | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-7805]], (aminomethyl)phosphonate degradation: |
− | ** ''' | + | ** '''2''' reactions found over '''8''' reactions in the full pathway |
+ | * [[PWY-7807]], glyphosate degradation III: | ||
+ | ** '''2''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24576 24576] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00004 R00004] |
− | * | + | * UNIPROT: |
− | ** [http://www. | + | ** [http://www.uniprot.org/uniprot/P21616 P21616] |
+ | ** [http://www.uniprot.org/uniprot/P31414 P31414] | ||
+ | ** [http://www.uniprot.org/uniprot/P28239 P28239] | ||
+ | ** [http://www.uniprot.org/uniprot/P37980 P37980] | ||
+ | ** [http://www.uniprot.org/uniprot/P84491 P84491] | ||
+ | ** [http://www.uniprot.org/uniprot/O59570 O59570] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S941 Q9S941] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S939 Q9S939] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S936 Q9S936] | ||
+ | ** [http://www.uniprot.org/uniprot/O26363 O26363] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S940 Q9S940] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S938 Q9S938] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S937 Q9S937] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PHM9 Q9PHM9] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9UY24 Q9UY24] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JVG3 Q9JVG3] | ||
+ | ** [http://www.uniprot.org/uniprot/P47593 P47593] | ||
+ | ** [http://www.uniprot.org/uniprot/Q974Y8 Q974Y8] | ||
+ | ** [http://www.uniprot.org/uniprot/O05724 O05724] | ||
+ | ** [http://www.uniprot.org/uniprot/P19514 P19514] | ||
+ | ** [http://www.uniprot.org/uniprot/P00817 P00817] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A7A9 P0A7A9] | ||
+ | ** [http://www.uniprot.org/uniprot/P13998 P13998] | ||
+ | ** [http://www.uniprot.org/uniprot/P19117 P19117] | ||
+ | ** [http://www.uniprot.org/uniprot/P21216 P21216] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9R5T3 Q9R5T3] | ||
+ | ** [http://www.uniprot.org/uniprot/P37981 P37981] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43801 Q43801] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43798 Q43798] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43797 Q43797] | ||
+ | ** [http://www.uniprot.org/uniprot/P50308 P50308] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43796 Q43796] | ||
+ | ** [http://www.uniprot.org/uniprot/P93409 P93409] | ||
+ | ** [http://www.uniprot.org/uniprot/Q8H616 Q8H616] | ||
+ | ** [http://www.uniprot.org/uniprot/P93410 P93410] | ||
+ | ** [http://www.uniprot.org/uniprot/P75250 P75250] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49071 Q49071] | ||
+ | ** [http://www.uniprot.org/uniprot/O48556 O48556] | ||
+ | ** [http://www.uniprot.org/uniprot/O22537 O22537] | ||
+ | ** [http://www.uniprot.org/uniprot/O82793 O82793] | ||
+ | ** [http://www.uniprot.org/uniprot/O23979 O23979] | ||
+ | ** [http://www.uniprot.org/uniprot/O49949 O49949] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43187 Q43187] | ||
+ | ** [http://www.uniprot.org/uniprot/O22124 O22124] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42650 Q42650] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42651 Q42651] | ||
+ | ** [http://www.uniprot.org/uniprot/O65151 O65151] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=inorganic diphosphatase|inorganic pyrophosphatase}} |
− | {{#set: ec-number=ec-3.1 | + | {{#set: ec-number=ec-3.6.1.1}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=12}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=2}} |
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:25, 15 January 2021
Contents
Reaction INORGPYROPHOSPHAT-RXN
- direction:
- left-to-right
- common-name:
- inorganic pyrophosphatase
- inorganic diphosphatase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ11426
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ11196
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ06186
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ07746
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ19856
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ19765
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ09890
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ10687
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ17386
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ17098
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ17991
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ21090
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7805, (aminomethyl)phosphonate degradation:
- 2 reactions found over 8 reactions in the full pathway
- PWY-7807, glyphosate degradation III:
- 2 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
- P21616
- P31414
- P28239
- P37980
- P84491
- O59570
- Q9S941
- Q9S939
- Q9S936
- O26363
- Q9S940
- Q9S938
- Q9S937
- Q9PHM9
- Q9UY24
- Q9JVG3
- P47593
- Q974Y8
- O05724
- P19514
- P00817
- P0A7A9
- P13998
- P19117
- P21216
- Q9R5T3
- P37981
- Q43801
- Q43798
- Q43797
- P50308
- Q43796
- P93409
- Q8H616
- P93410
- P75250
- Q49071
- O48556
- O22537
- O82793
- O23979
- O49949
- Q43187
- O22124
- Q42650
- Q42651
- O65151