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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE--TRNA-LIGASE-RXN TYROSINE--TRNA-LIGASE-RXN] == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSMANMUT-RXN-MANNOSE-1P//MANNOSE-6P.23. PHOSMANMUT-RXN-MANNOSE-1P//MANNOSE-6P.23.] == |
| | * direction: | | * direction: |
| − | ** left-to-right | + | ** reversible |
| − | * common-name:
| |
| − | ** tyrosine-trna ligase
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/6.1.1.1 ec-6.1.1.1]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[ATP]][c] '''+''' 1 [[TYR]][c] '''+''' 1 [[TYR-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-TYR-tRNAs]][c] '''+''' 1 [[PPI]][c] | + | * 1.0 [[MANNOSE-1P]][c] '''<=>''' 1.0 [[MANNOSE-6P]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | * Gene: [[SJ18555]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ02072]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ02063]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
| |
| − | ** '''21''' reactions found over '''21''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | + | * category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | {{#set: direction=reversible}} |
| − | * RHEA:
| + | {{#set: nb gene associated=0}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10221 10221]
| + | {{#set: nb pathway associated=0}} |
| − | * LIGAND-RXN:
| + | {{#set: reconstruction category=gap-filling}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02918 R02918]
| + | {{#set: reconstruction tool=meneco}} |
| − | * UNIPROT:
| + | {{#set: reconstruction comment=added for gapfilling}} |
| − | ** [http://www.uniprot.org/uniprot/P28669 P28669]
| + | {{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}} |
| − | ** [http://www.uniprot.org/uniprot/P22326 P22326]
| |
| − | ** [http://www.uniprot.org/uniprot/P36421 P36421]
| |
| − | ** [http://www.uniprot.org/uniprot/P41256 P41256]
| |
| − | ** [http://www.uniprot.org/uniprot/O51343 O51343]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9PN27 Q9PN27]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9CIH5 Q9CIH5]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9ZL69 Q9ZL69]
| |
| − | ** [http://www.uniprot.org/uniprot/P47693 P47693]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9ZCZ4 Q9ZCZ4]
| |
| − | ** [http://www.uniprot.org/uniprot/P43836 P43836]
| |
| − | ** [http://www.uniprot.org/uniprot/O83806 O83806]
| |
| − | ** [http://www.uniprot.org/uniprot/Q57834 Q57834]
| |
| − | ** [http://www.uniprot.org/uniprot/P56417 P56417]
| |
| − | ** [http://www.uniprot.org/uniprot/O67632 O67632]
| |
| − | ** [http://www.uniprot.org/uniprot/O58739 O58739]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9WYU8 Q9WYU8]
| |
| − | ** [http://www.uniprot.org/uniprot/O27795 O27795]
| |
| − | ** [http://www.uniprot.org/uniprot/O84065 O84065]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9JVY6 Q9JVY6]
| |
| − | ** [http://www.uniprot.org/uniprot/P48527 P48527]
| |
| − | ** [http://www.uniprot.org/uniprot/Q49900 Q49900]
| |
| − | ** [http://www.uniprot.org/uniprot/P75122 P75122]
| |
| − | ** [http://www.uniprot.org/uniprot/P73141 P73141]
| |
| − | ** [http://www.uniprot.org/uniprot/P73144 P73144]
| |
| − | ** [http://www.uniprot.org/uniprot/P95982 P95982]
| |
| − | ** [http://www.uniprot.org/uniprot/P00952 P00952]
| |
| − | ** [http://www.uniprot.org/uniprot/P04077 P04077]
| |
| − | ** [http://www.uniprot.org/uniprot/P0AGJ9 P0AGJ9]
| |
| − | ** [http://www.uniprot.org/uniprot/P12063 P12063]
| |
| − | ** [http://www.uniprot.org/uniprot/P93363 P93363]
| |
| − | ** [http://www.uniprot.org/uniprot/O14055 O14055]
| |
| − | </div>
| |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: common-name=tyrosine-trna ligase}}
| |
| − | {{#set: ec-number=ec-6.1.1.1}}
| |
| − | {{#set: nb gene associated=3}} | |
| − | {{#set: nb pathway associated=1}} | |
| − | {{#set: reconstruction category=orthology|annotation}} | |
| − | {{#set: reconstruction tool=pathwaytools|pantograph}} | |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} | |
