Difference between revisions of "Pathwaytools"
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(Created page with "Category:reaction == Reaction RXN-12959 == * direction: ** left-to-right * common-name: ** diacylglycerol kinase (ctp) * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.1...") |
(Created page with "Category:reaction == Reaction NITRATE-REDUCTASE-NADH-RXN == * direction: ** left-to-right * common-name: ** nitrate reductase ** nitrate reductase (nadh) * ec-number: ** [...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction NITRATE-REDUCTASE-NADH-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** nitrate reductase |
+ | ** nitrate reductase (nadh) | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/1.7.1.1 ec-1.7.1.1] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[NADH]][c] '''+''' 1 [[NITRATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[NITRITE]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ00644]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ15446]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[PWY-381]], nitrate reduction II (assimilatory): |
− | ** ''' | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR101964 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17915 17915] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00794 R00794] |
− | * | + | * UNIPROT: |
− | ** [http://www. | + | ** [http://www.uniprot.org/uniprot/Q39607 Q39607] |
+ | ** [http://www.uniprot.org/uniprot/Q41201 Q41201] | ||
+ | ** [http://www.uniprot.org/uniprot/P17569 P17569] | ||
+ | ** [http://www.uniprot.org/uniprot/P54233 P54233] | ||
+ | ** [http://www.uniprot.org/uniprot/P36841 P36841] | ||
+ | ** [http://www.uniprot.org/uniprot/P27967 P27967] | ||
+ | ** [http://www.uniprot.org/uniprot/P27969 P27969] | ||
+ | ** [http://www.uniprot.org/uniprot/P11035 P11035] | ||
+ | ** [http://www.uniprot.org/uniprot/P08509 P08509] | ||
+ | ** [http://www.uniprot.org/uniprot/P11605 P11605] | ||
+ | ** [http://www.uniprot.org/uniprot/P23312 P23312] | ||
+ | ** [http://www.uniprot.org/uniprot/P17570 P17570] | ||
+ | ** [http://www.uniprot.org/uniprot/P16081 P16081] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01170 Q01170] | ||
+ | ** [http://www.uniprot.org/uniprot/P39865 P39865] | ||
+ | ** [http://www.uniprot.org/uniprot/P11832 P11832] | ||
+ | ** [http://www.uniprot.org/uniprot/P39869 P39869] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43265 Q43265] | ||
+ | ** [http://www.uniprot.org/uniprot/P43101 P43101] | ||
+ | ** [http://www.uniprot.org/uniprot/P43100 P43100] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42497 Q42497] | ||
+ | ** [http://www.uniprot.org/uniprot/P39866 P39866] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=nitrate reductase (nadh)|nitrate reductase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-1.7.1.1}} |
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}} |
Revision as of 08:32, 15 March 2021
Contents
Reaction NITRATE-REDUCTASE-NADH-RXN
- direction:
- left-to-right
- common-name:
- nitrate reductase
- nitrate reductase (nadh)
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ00644
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ15446
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-381, nitrate reduction II (assimilatory):
- 3 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links