Difference between revisions of "PRAISOM-RXN"
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(Created page with "Category:reaction == Reaction RXN-9235 == * direction: ** left-to-right * common-name: ** ubiquinone biosynthesis methyltransferase * ec-number: ** [http://enzyme.expasy.o...") |
(Created page with "Category:reaction == Reaction RXN-1104 == * direction: ** left-to-right * common-name: ** caffeate 3-o-methyltransferase ** caffeate o-methyltransferase * ec-number: ** [h...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN- | + | == Reaction RXN-1104 == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** caffeate 3-o-methyltransferase |
+ | ** caffeate o-methyltransferase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2.1.1. | + | ** [http://enzyme.expasy.org/EC/2.1.1.68 ec-2.1.1.68] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[CPD- | + | * 1 [[CPD-676]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[FERULIC-ACID]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ07699]] | |
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ09797]] |
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** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | + | * Gene: [[SJ17434]] | |
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-2181]], free phenylpropanoid acid biosynthesis: |
− | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7498]], phenylpropanoids methylation (ice plant): |
− | ** ''' | + | ** '''2''' reactions found over '''10''' reactions in the full pathway |
+ | * [[PWY-7186]], superpathway of scopolin and esculin biosynthesis: | ||
+ | ** '''2''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-1121]], suberin monomers biosynthesis: | ||
+ | ** '''9''' reactions found over '''20''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * METANETX-RXN : MNXR108123 | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20226 20226] |
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R03366 R03366] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q41086 Q41086] | ||
+ | ** [http://www.uniprot.org/uniprot/P28002 P28002] | ||
+ | ** [http://www.uniprot.org/uniprot/Q00763 Q00763] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=caffeate 3-o-methyltransferase|caffeate o-methyltransferase}} |
− | {{#set: ec-number=ec-2.1.1. | + | {{#set: ec-number=ec-2.1.1.68}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=3}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=4}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 08:33, 15 March 2021
Contents
Reaction RXN-1104
- direction:
- left-to-right
- common-name:
- caffeate 3-o-methyltransferase
- caffeate o-methyltransferase
- ec-number:
Reaction formula
- 1 CPD-676[c] + 1 S-ADENOSYLMETHIONINE[c] => 1 ADENOSYL-HOMO-CYS[c] + 1 FERULIC-ACID[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ07699
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ09797
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ17434
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-2181, free phenylpropanoid acid biosynthesis:
- 3 reactions found over 4 reactions in the full pathway
- PWY-7498, phenylpropanoids methylation (ice plant):
- 2 reactions found over 10 reactions in the full pathway
- PWY-7186, superpathway of scopolin and esculin biosynthesis:
- 2 reactions found over 12 reactions in the full pathway
- PWY-1121, suberin monomers biosynthesis:
- 9 reactions found over 20 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links