Difference between revisions of "TRANS-CINNAMATE-4-MONOOXYGENASE-RXN"

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(Created page with "Category:reaction == Reaction ORNDECARBOX-RXN == * direction: ** left-to-right * common-name: ** ornithine decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1...")
(Created page with "Category:reaction == Reaction LCYSDESULF-RXN == * direction: ** left-to-right * common-name: ** cystathionine gamma-lyase * ec-number: ** [http://enzyme.expasy.org/EC/4.4....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ORNDECARBOX-RXN ==
+
== Reaction LCYSDESULF-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** ornithine decarboxylase
+
** cystathionine gamma-lyase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.17 ec-4.1.1.17]
+
** [http://enzyme.expasy.org/EC/4.4.1.1 ec-4.4.1.1]
 +
** [http://enzyme.expasy.org/EC/4.4.1.28 ec-4.4.1.28]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-ORNITHINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PUTRESCINE]][c]
+
* 1 [[CYS]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[HS]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13198]]
+
* Gene: [[SJ05358]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ20026]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ16944]]
+
* Gene: [[SJ05357]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-46]], putrescine biosynthesis III:
+
* [[PWY66-426]], hydrogen sulfide biosynthesis II (mammalian):
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6305]], superpathway of putrescine biosynthesis:
 
−
** '''4''' reactions found over '''n.a''' reactions in the full pathway
 
−
* [[ORNDEG-PWY]], superpathway of ornithine degradation:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR96994
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22965 22965]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24932 24932]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00670 R00670]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00782 R00782]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P24169 P24169]
 
−
** [http://www.uniprot.org/uniprot/P27121 P27121]
 
−
** [http://www.uniprot.org/uniprot/P27116 P27116]
 
−
** [http://www.uniprot.org/uniprot/P27120 P27120]
 
−
** [http://www.uniprot.org/uniprot/P43099 P43099]
 
−
** [http://www.uniprot.org/uniprot/Q9X2I6 Q9X2I6]
 
−
** [http://www.uniprot.org/uniprot/P08432 P08432]
 
−
** [http://www.uniprot.org/uniprot/P27118 P27118]
 
−
** [http://www.uniprot.org/uniprot/P11926 P11926]
 
−
** [http://www.uniprot.org/uniprot/P14019 P14019]
 
−
** [http://www.uniprot.org/uniprot/P00860 P00860]
 
−
** [http://www.uniprot.org/uniprot/P09057 P09057]
 
−
** [http://www.uniprot.org/uniprot/Q9TZZ6 Q9TZZ6]
 
−
** [http://www.uniprot.org/uniprot/P44317 P44317]
 
−
** [http://www.uniprot.org/uniprot/O66940 O66940]
 
−
** [http://www.uniprot.org/uniprot/P27119 P27119]
 
−
** [http://www.uniprot.org/uniprot/P49725 P49725]
 
−
** [http://www.uniprot.org/uniprot/P50134 P50134]
 
−
** [http://www.uniprot.org/uniprot/P93351 P93351]
 
−
** [http://www.uniprot.org/uniprot/P93357 P93357]
 
−
** [http://www.uniprot.org/uniprot/O15696 O15696]
 
−
** [http://www.uniprot.org/uniprot/Q84527 Q84527]
 
−
** [http://www.uniprot.org/uniprot/P41931 P41931]
 
−
** [http://www.uniprot.org/uniprot/O69865 O69865]
 
−
** [http://www.uniprot.org/uniprot/Q9UQW9 Q9UQW9]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=ornithine decarboxylase}}
+
{{#set: common-name=cystathionine gamma-lyase}}
−
{{#set: ec-number=ec-4.1.1.17}}
+
{{#set: ec-number=ec-4.4.1.28|ec-4.4.1.1}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:34, 15 March 2021

Reaction LCYSDESULF-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY66-426, hydrogen sulfide biosynthesis II (mammalian):
    • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR96994
  • RHEA:
  • LIGAND-RXN:





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