Difference between revisions of "ENTDB-RXN"
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(Created page with "Category:reaction == Reaction DEOXYGUANPHOSPHOR-RXN == * direction: ** reversible * common-name: ** deoxyguanosine phosphorylase * ec-number: ** [http://enzyme.expasy.org/...") |
(Created page with "Category:reaction == Reaction PHOSPHORIBULOKINASE-RXN == * direction: ** reversible * common-name: ** phosphoribulokinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7....") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction PHOSPHORIBULOKINASE-RXN == |
* direction: | * direction: | ||
** reversible | ** reversible | ||
* common-name: | * common-name: | ||
− | ** | + | ** phosphoribulokinase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2. | + | ** [http://enzyme.expasy.org/EC/2.7.1.19 ec-2.7.1.19] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[RIBULOSE-5P]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[D-RIBULOSE-15-P2]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ04903]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-5723]], Rubisco shunt: |
− | ** ''' | + | ** '''10''' reactions found over '''10''' reactions in the full pathway |
− | * [[PWY | + | * [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: |
− | ** ''' | + | ** '''12''' reactions found over '''13''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * METANETX-RXN : MNXR103217 | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19368 19368] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01523 R01523] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P23010 P23010] | ||
+ | ** [http://www.uniprot.org/uniprot/P0AEX5 P0AEX5] | ||
+ | ** [http://www.uniprot.org/uniprot/P19923 P19923] | ||
+ | ** [http://www.uniprot.org/uniprot/P19924 P19924] | ||
+ | ** [http://www.uniprot.org/uniprot/P23015 P23015] | ||
+ | ** [http://www.uniprot.org/uniprot/P12033 P12033] | ||
+ | ** [http://www.uniprot.org/uniprot/Q8GRU9 Q8GRU9] | ||
+ | ** [http://www.uniprot.org/uniprot/P09559 P09559] | ||
+ | ** [http://www.uniprot.org/uniprot/P25697 P25697] | ||
+ | ** [http://www.uniprot.org/uniprot/P93681 P93681] | ||
+ | ** [http://www.uniprot.org/uniprot/P19824 P19824] | ||
+ | ** [http://www.uniprot.org/uniprot/P27774 P27774] | ||
{{#set: direction=reversible}} | {{#set: direction=reversible}} | ||
− | {{#set: common-name= | + | {{#set: common-name=phosphoribulokinase}} |
− | {{#set: ec-number=ec-2. | + | {{#set: ec-number=ec-2.7.1.19}} |
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
{{#set: nb pathway associated=2}} | {{#set: nb pathway associated=2}} | ||
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 08:36, 15 March 2021
Contents
Reaction PHOSPHORIBULOKINASE-RXN
- direction:
- reversible
- common-name:
- phosphoribulokinase
- ec-number:
Reaction formula
- 1 ATP[c] + 1 RIBULOSE-5P[c] <=> 1 ADP[c] + 1 D-RIBULOSE-15-P2[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ04903
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5723, Rubisco shunt:
- 10 reactions found over 10 reactions in the full pathway
- CALVIN-PWY, Calvin-Benson-Bassham cycle:
- 12 reactions found over 13 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- METANETX-RXN : MNXR103217
- RHEA:
- LIGAND-RXN:
- UNIPROT: