Difference between revisions of "ATP LPAREN 3h RPAREN tm"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction GLUTAMATESYN-RXN == * direction: ** left-to-right * common-name: ** l-glutamate:nadp+ oxidoreductase (transaminating) * ec-number: ** [http:/...") |
(Created page with "Category:reaction == Reaction GLYCINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** glycine-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction GLYCINE--TRNA-LIGASE-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** glycine-trna ligase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1 | + | ** [http://enzyme.expasy.org/EC/6.1.1.14 ec-6.1.1.14] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[GLY-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-GLY-tRNAs]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ04580]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ16484]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ16976]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** Source: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[TRNA-CHARGING-PWY]], tRNA charging: |
− | + | ** '''21''' reactions found over '''21''' reactions in the full pathway | |
− | |||
− | ** ''' | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR115938 | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16014 16014] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03654 R03654] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P41250 P41250] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P54380 P54380] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9ZCB1 Q9ZCB1] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P43822 P43822] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P54381 P54381] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/O51344 O51344] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q46371 Q46371] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9ZCB0 Q9ZCB0] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9WY59 Q9WY59] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P43821 P43821] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/O83678 O83678] |
+ | ** [http://www.uniprot.org/uniprot/Q9WY60 Q9WY60] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PPK3 Q9PPK3] | ||
+ | ** [http://www.uniprot.org/uniprot/P56454 P56454] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PN63 Q9PN63] | ||
+ | ** [http://www.uniprot.org/uniprot/Q57681 Q57681] | ||
+ | ** [http://www.uniprot.org/uniprot/P67029 P67029] | ||
+ | ** [http://www.uniprot.org/uniprot/O67081 O67081] | ||
+ | ** [http://www.uniprot.org/uniprot/O67898 O67898] | ||
+ | ** [http://www.uniprot.org/uniprot/O59235 O59235] | ||
+ | ** [http://www.uniprot.org/uniprot/P47493 P47493] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZKP1 Q9ZKP1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JW67 Q9JW67] | ||
+ | ** [http://www.uniprot.org/uniprot/P56453 P56453] | ||
+ | ** [http://www.uniprot.org/uniprot/O27874 O27874] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZKM9 Q9ZKM9] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CGK0 Q9CGK0] | ||
+ | ** [http://www.uniprot.org/uniprot/P38088 P38088] | ||
+ | ** [http://www.uniprot.org/uniprot/Q06817 Q06817] | ||
+ | ** [http://www.uniprot.org/uniprot/Q51114 Q51114] | ||
+ | ** [http://www.uniprot.org/uniprot/P75425 P75425] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55716 Q55716] | ||
+ | ** [http://www.uniprot.org/uniprot/P00960 P00960] | ||
+ | ** [http://www.uniprot.org/uniprot/P00961 P00961] | ||
+ | ** [http://www.uniprot.org/uniprot/Q8L785 Q8L785] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=glycine-trna ligase}} |
− | {{#set: ec-number=ec-1 | + | {{#set: ec-number=ec-6.1.1.14}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=3}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=1}} |
− | {{#set: reconstruction category=annotation | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 08:39, 15 March 2021
Contents
Reaction GLYCINE--TRNA-LIGASE-RXN
- direction:
- left-to-right
- common-name:
- glycine-trna ligase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ04580
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ16484
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ16976
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- TRNA-CHARGING-PWY, tRNA charging:
- 21 reactions found over 21 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- METANETX-RXN : MNXR115938
- RHEA:
- LIGAND-RXN:
- UNIPROT: