Difference between revisions of "AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN"

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(Created page with "Category:reaction == Reaction GGPS == * direction: ** left-to-right * common-name: ** geranylgeranyl diphosphate synthase == Reaction formula == * 1.0 DELTA3-ISOPENTENYL...")
(Created page with "Category:reaction == Reaction AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN == * direction: ** left-to-right * common-name: ** tryptophan decarboxylase * ec-number: ** [http://e...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GGPS ==
+
== Reaction AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** geranylgeranyl diphosphate synthase
+
** tryptophan decarboxylase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/4.1.1.q ec-4.1.1.q]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[DELTA3-ISOPENTENYL-PP]][h] '''+''' 1.0 [[FARNESYL-PP]][h] '''=>''' 1.0 [[GERANYLGERANYL-PP]][h] '''+''' 1.0 [[PPI]][h] '''+''' 1.0 [[PROTON]][h]
+
* 1 [[PROTON]][c] '''+''' 1 [[TRP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[TRYPTAMINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10346]]
+
* Gene: [[SJ11952]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-3181]], L-tryptophan degradation VI (via tryptamine):
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-581]], indole-3-acetate biosynthesis II:
 +
** '''5''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5473]], hydroxycinnamic acid serotonin amides biosynthesis:
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5877]], beta-carboline biosynthesis:
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6326]], camptothecin biosynthesis:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6307]], L-tryptophan degradation X (mammalian, via tryptamine):
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7936]], psilocybin biosynthesis:
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5290]], secologanin and strictosidine biosynthesis:
 +
** '''2''' reactions found over '''17''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR101250
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30340 30340]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00685 R00685]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P27718 P27718]
 +
** [http://www.uniprot.org/uniprot/P05031 P05031]
 +
** [http://www.uniprot.org/uniprot/P20711 P20711]
 +
** [http://www.uniprot.org/uniprot/P17770 P17770]
 +
** [http://www.uniprot.org/uniprot/P14173 P14173]
 +
** [http://www.uniprot.org/uniprot/P22781 P22781]
 +
** [http://www.uniprot.org/uniprot/P54770 P54770]
 +
** [http://www.uniprot.org/uniprot/O82414 O82414]
 +
** [http://www.uniprot.org/uniprot/P54771 P54771]
 +
** [http://www.uniprot.org/uniprot/P34751 P34751]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=geranylgeranyl diphosphate synthase}}
+
{{#set: common-name=tryptophan decarboxylase}}
 +
{{#set: ec-number=ec-4.1.1.q}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=8}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • tryptophan decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-3181, L-tryptophan degradation VI (via tryptamine):
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-581, indole-3-acetate biosynthesis II:
    • 5 reactions found over 12 reactions in the full pathway
  • PWY-5473, hydroxycinnamic acid serotonin amides biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-5877, beta-carboline biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6326, camptothecin biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-6307, L-tryptophan degradation X (mammalian, via tryptamine):
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7936, psilocybin biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-5290, secologanin and strictosidine biosynthesis:
    • 2 reactions found over 17 reactions in the full pathway

Reconstruction information

External links





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