Difference between revisions of "ACYLCOADEHYDROG-RXN"
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(Created page with "Category:reaction == Reaction FTHFL == * direction: ** left-to-right * common-name: ** formate--tetrahydrofolate ligase == Reaction formula == * 1.0 ATP[c] '''+''' 1.0...") |
(Created page with "Category:reaction == Reaction ACYLCOADEHYDROG-RXN == * direction: ** left-to-right * common-name: ** acyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1....") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction ACYLCOADEHYDROG-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** acyl-coa dehydrogenase |
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/1.3.8 ec-1.3.8] | ||
+ | * synonymous: | ||
+ | ** general acyl coa dehydrogenase | ||
+ | ** medium-chain acyl-coenzyme a dehydrogenase | ||
+ | ** fatty acyl coenzyme a dehydrogenase | ||
+ | ** long-chain acyl coenzyme a dehydrogenase | ||
+ | ** fatty-acyl-coa dehydrogenase | ||
+ | ** long-chain acyl-coa dehydrogenase | ||
+ | ** acyl coenzyme a dehydrogenase | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 | + | * 1 [[ETF-Oxidized]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] '''=>''' 1 [[ETF-Reduced]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[SJ03090]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ19669]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** Source: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
+ | * Gene: [[SJ04334]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ06456]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ01215]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ06470]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ21233]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ07451]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ15262]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ13468]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ07241]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ07909]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ21703]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ07452]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[FAO-PWY]], fatty acid β-oxidation I (generic): | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[orthology]]; source: [[ | + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * METANETX-RXN : MNXR115669 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=44705 44705] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P16219 P16219] | ||
+ | ** [http://www.uniprot.org/uniprot/P45952 P45952] | ||
+ | ** [http://www.uniprot.org/uniprot/P15651 P15651] | ||
+ | ** [http://www.uniprot.org/uniprot/P11310 P11310] | ||
+ | ** [http://www.uniprot.org/uniprot/P08503 P08503] | ||
+ | ** [http://www.uniprot.org/uniprot/Q07417 Q07417] | ||
+ | ** [http://www.uniprot.org/uniprot/Q54857 Q54857] | ||
+ | ** [http://www.uniprot.org/uniprot/P45867 P45867] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9X3R3 Q9X3R3] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9R9I6 Q9R9I6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q96329 Q96329] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=acyl-coa dehydrogenase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-1.3.8}} |
− | {{#set: nb pathway associated= | + | {{#set: synonymous=medium-chain acyl-coenzyme a dehydrogenase|long-chain acyl coenzyme a dehydrogenase|long-chain acyl-coa dehydrogenase|fatty-acyl-coa dehydrogenase|fatty acyl coenzyme a dehydrogenase|general acyl coa dehydrogenase|acyl coenzyme a dehydrogenase}} |
− | {{#set: reconstruction category=orthology}} | + | {{#set: nb gene associated=14}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: nb pathway associated=1}} |
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Latest revision as of 11:20, 18 March 2021
Contents
Reaction ACYLCOADEHYDROG-RXN
- direction:
- left-to-right
- common-name:
- acyl-coa dehydrogenase
- ec-number:
- synonymous:
- general acyl coa dehydrogenase
- medium-chain acyl-coenzyme a dehydrogenase
- fatty acyl coenzyme a dehydrogenase
- long-chain acyl coenzyme a dehydrogenase
- fatty-acyl-coa dehydrogenase
- long-chain acyl-coa dehydrogenase
- acyl coenzyme a dehydrogenase
Reaction formula
- 1 ETF-Oxidized[c] + 1 PROTON[c] + 1 Saturated-Fatty-Acyl-CoA[c] => 1 ETF-Reduced[c] + 1 TRANS-D2-ENOYL-COA[c]
Gene(s) associated with this reaction
- Gene: SJ03090
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ19669
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ04334
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ06456
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ01215
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ06470
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ21233
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ07451
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ15262
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ13468
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ07241
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ07909
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ21703
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ07452
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- FAO-PWY, fatty acid β-oxidation I (generic):
- 6 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- METANETX-RXN : MNXR115669
- RHEA:
- UNIPROT: