Difference between revisions of "SHIKIMATE-KINASE-RXN"

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(Created page with "Category:reaction == Reaction HISTIDINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** histidine-trna ligase * ec-number: ** [http://enzyme.expasy.org...")
(Created page with "Category:reaction == Reaction SHIKIMATE-KINASE-RXN == * direction: ** reversible * common-name: ** shikimate kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.71 e...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction HISTIDINE--TRNA-LIGASE-RXN ==
+
== Reaction SHIKIMATE-KINASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** histidine-trna ligase
+
** shikimate kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.21 ec-6.1.1.21]
+
** [http://enzyme.expasy.org/EC/2.7.1.71 ec-2.7.1.71]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[HIS]][c] '''+''' 1 [[HIS-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-HIS-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[SHIKIMATE]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SHIKIMATE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21166]]
+
* Gene: [[SJ04949]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07221]]
+
* Gene: [[SJ05909]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10493]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''6''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* METANETX-RXN : MNXR115961
+
* METANETX-RXN : MNXR104379
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17314 17314]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13124 13124]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03655 R03655]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02412 R02412]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9X0H5 Q9X0H5]
+
** [http://www.uniprot.org/uniprot/P0A6D7 P0A6D7]
−
** [http://www.uniprot.org/uniprot/O58028 O58028]
+
** [http://www.uniprot.org/uniprot/Q9PIB5 Q9PIB5]
−
** [http://www.uniprot.org/uniprot/O67223 O67223]
+
** [http://www.uniprot.org/uniprot/P07547 P07547]
−
** [http://www.uniprot.org/uniprot/Q9ZK27 Q9ZK27]
+
** [http://www.uniprot.org/uniprot/P08566 P08566]
−
** [http://www.uniprot.org/uniprot/Q9PPF4 Q9PPF4]
+
** [http://www.uniprot.org/uniprot/P43880 P43880]
−
** [http://www.uniprot.org/uniprot/P56455 P56455]
+
** [http://www.uniprot.org/uniprot/P63600 P63600]
−
** [http://www.uniprot.org/uniprot/Q58406 Q58406]
+
** [http://www.uniprot.org/uniprot/Q9CEU1 Q9CEU1]
−
** [http://www.uniprot.org/uniprot/O32039 O32039]
+
** [http://www.uniprot.org/uniprot/P37944 P37944]
−
** [http://www.uniprot.org/uniprot/O51160 O51160]
+
** [http://www.uniprot.org/uniprot/P0A6E1 P0A6E1]
−
** [http://www.uniprot.org/uniprot/O66522 O66522]
+
** [http://www.uniprot.org/uniprot/P10880 P10880]
−
** [http://www.uniprot.org/uniprot/Q9ZDL9 Q9ZDL9]
+
** [http://www.uniprot.org/uniprot/Q00497 Q00497]
−
** [http://www.uniprot.org/uniprot/Q9JUZ9 Q9JUZ9]
+
** [http://www.uniprot.org/uniprot/P34003 P34003]
−
** [http://www.uniprot.org/uniprot/Q9CE78 Q9CE78]
+
** [http://www.uniprot.org/uniprot/P43906 P43906]
−
** [http://www.uniprot.org/uniprot/P47281 P47281]
+
** [http://www.uniprot.org/uniprot/P72796 P72796]
−
** [http://www.uniprot.org/uniprot/O34459 O34459]
 
−
** [http://www.uniprot.org/uniprot/O83647 O83647]
 
−
** [http://www.uniprot.org/uniprot/O84547 O84547]
 
−
** [http://www.uniprot.org/uniprot/Q9Z7P1 Q9Z7P1]
 
−
** [http://www.uniprot.org/uniprot/P43823 P43823]
 
−
** [http://www.uniprot.org/uniprot/Q61035 Q61035]
 
−
** [http://www.uniprot.org/uniprot/P30053 P30053]
 
−
** [http://www.uniprot.org/uniprot/P46696 P46696]
 
−
** [http://www.uniprot.org/uniprot/P51348 P51348]
 
−
** [http://www.uniprot.org/uniprot/P75069 P75069]
 
−
** [http://www.uniprot.org/uniprot/Q55653 Q55653]
 
−
** [http://www.uniprot.org/uniprot/Q49027 Q49027]
 
−
** [http://www.uniprot.org/uniprot/P07263 P07263]
 
−
** [http://www.uniprot.org/uniprot/P60906 P60906]
 
−
** [http://www.uniprot.org/uniprot/P12081 P12081]
 
−
** [http://www.uniprot.org/uniprot/P93422 P93422]
 
−
** [http://www.uniprot.org/uniprot/O82413 O82413]
 
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=histidine-trna ligase}}
+
{{#set: common-name=shikimate kinase}}
−
{{#set: ec-number=ec-6.1.1.21}}
+
{{#set: ec-number=ec-2.7.1.71}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction SHIKIMATE-KINASE-RXN

  • direction:
    • reversible
  • common-name:
    • shikimate kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate:
    • 6 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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