Difference between revisions of "GLUTDEHYD-RXN"

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(Created page with "Category:reaction == Reaction 3-ISOPROPYLMALDEHYDROG-RXN == * direction: ** reversible * common-name: ** 3-isopropylmalate dehydrogenase * synonymous: ** threo-ds-3-isopro...")
(Created page with "Category:reaction == Reaction GLUTDEHYD-RXN == * direction: ** reversible * common-name: ** glutamate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.4.1.4 ec...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-ISOPROPYLMALDEHYDROG-RXN ==
+
== Reaction GLUTDEHYD-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** 3-isopropylmalate dehydrogenase
+
** glutamate dehydrogenase
−
* synonymous:
+
* ec-number:
−
** threo-ds-3-isopropylmalate dehydrogenase
+
** [http://enzyme.expasy.org/EC/1.4.1.4 ec-1.4.1.4]
−
** β-isopropylmalic enzyme
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[CPD-7100]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[GLT]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21291]]
+
* Gene: [[SJ10621]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20190]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10812]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10813]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20174]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[LEUSYN-PWY]], L-leucine biosynthesis:
+
* [[GLUTSYNIII-PWY]], L-glutamate biosynthesis III:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
+
* [[PWY-5675]], nitrate reduction V (assimilatory):
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY490-3]], nitrate reduction VI (assimilatory):
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* METANETX-RXN : MNXR100878
+
* METANETX-RXN : MNXR100086
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10895 10895]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11615 11615]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04426 R04426]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00248 R00248]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P05644 P05644]
+
** [http://www.uniprot.org/uniprot/P07262 P07262]
−
** [http://www.uniprot.org/uniprot/P05645 P05645]
+
** [http://www.uniprot.org/uniprot/P15111 P15111]
−
** [http://www.uniprot.org/uniprot/Q01987 Q01987]
+
** [http://www.uniprot.org/uniprot/P28724 P28724]
−
** [http://www.uniprot.org/uniprot/Q00412 Q00412]
+
** [http://www.uniprot.org/uniprot/P43793 P43793]
−
** [http://www.uniprot.org/uniprot/P08791 P08791]
+
** [http://www.uniprot.org/uniprot/Q9JT56 Q9JT56]
−
** [http://www.uniprot.org/uniprot/P30125 P30125]
+
** [http://www.uniprot.org/uniprot/P00370 P00370]
−
** [http://www.uniprot.org/uniprot/Q9PLW0 Q9PLW0]
+
** [http://www.uniprot.org/uniprot/P00369 P00369]
−
** [http://www.uniprot.org/uniprot/O66607 O66607]
+
** [http://www.uniprot.org/uniprot/P29507 P29507]
−
** [http://www.uniprot.org/uniprot/P12010 P12010]
+
** [http://www.uniprot.org/uniprot/P28998 P28998]
−
** [http://www.uniprot.org/uniprot/P04173 P04173]
+
** [http://www.uniprot.org/uniprot/P29051 P29051]
−
** [http://www.uniprot.org/uniprot/Q5SIY4 Q5SIY4]
+
** [http://www.uniprot.org/uniprot/P31026 P31026]
−
** [http://www.uniprot.org/uniprot/P24098 P24098]
+
** [http://www.uniprot.org/uniprot/P39475 P39475]
−
** [http://www.uniprot.org/uniprot/Q9JU79 Q9JU79]
+
** [http://www.uniprot.org/uniprot/P39708 P39708]
−
** [http://www.uniprot.org/uniprot/P43860 P43860]
+
** [http://www.uniprot.org/uniprot/P54387 P54387]
−
** [http://www.uniprot.org/uniprot/P41019 P41019]
+
** [http://www.uniprot.org/uniprot/P54386 P54386]
−
** [http://www.uniprot.org/uniprot/P54354 P54354]
+
** [http://www.uniprot.org/uniprot/P95544 P95544]
−
** [http://www.uniprot.org/uniprot/Q56268 Q56268]
+
** [http://www.uniprot.org/uniprot/P78804 P78804]
−
** [http://www.uniprot.org/uniprot/P29102 P29102]
 
−
** [http://www.uniprot.org/uniprot/P37412 P37412]
 
−
** [http://www.uniprot.org/uniprot/P23390 P23390]
 
−
** [http://www.uniprot.org/uniprot/P29696 P29696]
 
−
** [http://www.uniprot.org/uniprot/P41766 P41766]
 
−
** [http://www.uniprot.org/uniprot/Q02143 Q02143]
 
−
** [http://www.uniprot.org/uniprot/P34733 P34733]
 
−
** [http://www.uniprot.org/uniprot/P50180 P50180]
 
−
** [http://www.uniprot.org/uniprot/Q12591 Q12591]
 
−
** [http://www.uniprot.org/uniprot/Q12590 Q12590]
 
−
** [http://www.uniprot.org/uniprot/Q12592 Q12592]
 
−
** [http://www.uniprot.org/uniprot/P07139 P07139]
 
−
** [http://www.uniprot.org/uniprot/P41926 P41926]
 
−
** [http://www.uniprot.org/uniprot/P48012 P48012]
 
−
** [http://www.uniprot.org/uniprot/P87256 P87256]
 
−
** [http://www.uniprot.org/uniprot/P87257 P87257]
 
−
** [http://www.uniprot.org/uniprot/P73960 P73960]
 
−
** [http://www.uniprot.org/uniprot/O86504 O86504]
 
−
** [http://www.uniprot.org/uniprot/O85837 O85837]
 
−
** [http://www.uniprot.org/uniprot/P18869 P18869]
 
−
** [http://www.uniprot.org/uniprot/P34738 P34738]
 
 
</div>
 
</div>
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=3-isopropylmalate dehydrogenase}}
+
{{#set: common-name=glutamate dehydrogenase}}
−
{{#set: synonymous=threo-ds-3-isopropylmalate dehydrogenase|&beta;-isopropylmalic enzyme}}
+
{{#set: ec-number=ec-1.4.1.4}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction GLUTDEHYD-RXN

  • direction:
    • reversible
  • common-name:
    • glutamate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUTSYNIII-PWY, L-glutamate biosynthesis III:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5675, nitrate reduction V (assimilatory):
    • 4 reactions found over 4 reactions in the full pathway
  • PWY490-3, nitrate reduction VI (assimilatory):
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs):
    • 10 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=GLUTDEHYD-RXN&oldid=141339"