Difference between revisions of "BRANCHED-CHAINAMINOTRANSFERVAL-RXN"
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(Created page with "Category:reaction == Reaction 5-FORMYL-THF-CYCLO-LIGASE-RXN == * direction: ** left-to-right * common-name: ** 5-formyltetrahydrofolate cyclo-ligase * ec-number: ** [http:...") |
(Created page with "Category:reaction == Reaction BRANCHED-CHAINAMINOTRANSFERVAL-RXN == * direction: ** reversible * common-name: ** valine transaminase * ec-number: ** [http://enzyme.expasy....") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction BRANCHED-CHAINAMINOTRANSFERVAL-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** valine transaminase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/6. | + | ** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[VAL]][c] '''<=>''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[GLT]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ17677]] |
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ06412]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ04586]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
Line 19: | Line 24: | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY | + | * [[VALSYN-PWY]], L-valine biosynthesis: |
− | ** ''' | + | ** '''4''' reactions found over '''4''' reactions in the full pathway |
− | * [[ | + | * [[ALANINE-VALINESYN-PWY]], L-alanine biosynthesis I: |
− | ** ''' | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5057]], L-valine degradation II: |
− | ** ''' | + | ** '''2''' reactions found over '''3''' reactions in the full pathway |
+ | * [[VALDEG-PWY]], L-valine degradation I: | ||
+ | ** '''6''' reactions found over '''8''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
− | * METANETX-RXN : | + | * METANETX-RXN : MNXR96230 |
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24816 24816] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01214 R01214] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P38891 P38891] |
− | {{#set: direction= | + | ** [http://www.uniprot.org/uniprot/P47176 P47176] |
− | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/O86505 O86505] |
− | {{#set: ec-number=ec-6. | + | ** [http://www.uniprot.org/uniprot/O14370 O14370] |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/O32954 O32954] |
− | {{#set: nb pathway associated= | + | ** [http://www.uniprot.org/uniprot/P0AB80 P0AB80] |
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=valine transaminase}} | ||
+ | {{#set: ec-number=ec-2.6.1.42}} | ||
+ | {{#set: nb gene associated=3}} | ||
+ | {{#set: nb pathway associated=4}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Latest revision as of 11:23, 18 March 2021
Contents
Reaction BRANCHED-CHAINAMINOTRANSFERVAL-RXN
- direction:
- reversible
- common-name:
- valine transaminase
- ec-number:
Reaction formula
- 1 2-KETOGLUTARATE[c] + 1 VAL[c] <=> 1 2-KETO-ISOVALERATE[c] + 1 GLT[c]
Gene(s) associated with this reaction
- Gene: SJ17677
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ06412
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ04586
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- VALSYN-PWY, L-valine biosynthesis:
- 4 reactions found over 4 reactions in the full pathway
- ALANINE-VALINESYN-PWY, L-alanine biosynthesis I:
- 1 reactions found over 2 reactions in the full pathway
- PWY-5057, L-valine degradation II:
- 2 reactions found over 3 reactions in the full pathway
- VALDEG-PWY, L-valine degradation I:
- 6 reactions found over 8 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- METANETX-RXN : MNXR96230
- RHEA:
- LIGAND-RXN:
- UNIPROT: