Difference between revisions of "MALSYN-RXN"
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(Created page with "Category:reaction == Reaction RXN-11999 == * direction: ** left-to-right == Reaction formula == * 1 CPD-12932[c] '''=>''' 1 CPD-12936[c] == Gene(s) associated with...") |
(Created page with "Category:reaction == Reaction MALSYN-RXN == * direction: ** left-to-right * common-name: ** malate synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.3.9 ec-2.3.3.9...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction MALSYN-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** malate synthase | ||
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/2.3.3.9 ec-2.3.3.9] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ACETYL-COA]][c] '''+''' 1 [[GLYOX]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[MAL]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ14150]] |
− | ** Category: [[ | + | ** Category: [[annotation]] |
− | *** Source: [[ | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): |
− | ** ''' | + | ** '''10''' reactions found over '''9''' reactions in the full pathway |
+ | * [[PWY-6969]], TCA cycle V (2-oxoglutarate synthase): | ||
+ | ** '''10''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[GLYOXYLATE-BYPASS]], glyoxylate cycle: | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7294]], D-xylose degradation IV: | ||
+ | ** '''1''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7295]], L-arabinose degradation IV: | ||
+ | ** '''1''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7854]], crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered): | ||
+ | ** '''1''' reactions found over '''14''' reactions in the full pathway | ||
+ | * [[PWY-7118]], chitin deacetylation: | ||
+ | ** '''5''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[GLYOXDEG-PWY]], glycolate and glyoxylate degradation II: | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
− | * METANETX-RXN : | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * METANETX-RXN : MNXR101347 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18182 18182] | ||
+ | * PIR: | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40715 I40715] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0195 JX0195] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0196 JX0196] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15387 S15387] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17773 S17773] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17774 S17774] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26645 S26645] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44186 S44186] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S48493 S48493] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51788 S51788] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCNMU SYCNMU] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCSM2 SYCSM2] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYECMA SYECMA] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYHQMA SYHQMA] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYKVMA SYKVMA] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYRPMA SYRPMA] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T03412 T03412] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07690 T07690] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44752 T44752] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00472 R00472] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P42450 P42450] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02216 Q02216] | ||
+ | ** [http://www.uniprot.org/uniprot/P28344 P28344] | ||
+ | ** [http://www.uniprot.org/uniprot/P28345 P28345] | ||
+ | ** [http://www.uniprot.org/uniprot/P30952 P30952] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43827 Q43827] | ||
+ | ** [http://www.uniprot.org/uniprot/P21826 P21826] | ||
+ | ** [http://www.uniprot.org/uniprot/P37330 P37330] | ||
+ | ** [http://www.uniprot.org/uniprot/P17432 P17432] | ||
+ | ** [http://www.uniprot.org/uniprot/P17815 P17815] | ||
+ | ** [http://www.uniprot.org/uniprot/P08997 P08997] | ||
+ | ** [http://www.uniprot.org/uniprot/P21360 P21360] | ||
+ | ** [http://www.uniprot.org/uniprot/P08216 P08216] | ||
+ | ** [http://www.uniprot.org/uniprot/P13244 P13244] | ||
+ | ** [http://www.uniprot.org/uniprot/P49081 P49081] | ||
+ | ** [http://www.uniprot.org/uniprot/P45458 P45458] | ||
+ | ** [http://www.uniprot.org/uniprot/O32913 O32913] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: nb gene associated= | + | {{#set: common-name=malate synthase}} |
− | {{#set: nb pathway associated= | + | {{#set: ec-number=ec-2.3.3.9}} |
− | {{#set: reconstruction category=orthology}} | + | {{#set: nb gene associated=1}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: nb pathway associated=8}} |
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Latest revision as of 11:24, 18 March 2021
Contents
Reaction MALSYN-RXN
- direction:
- left-to-right
- common-name:
- malate synthase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ14150
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
- 10 reactions found over 9 reactions in the full pathway
- PWY-6969, TCA cycle V (2-oxoglutarate synthase):
- 10 reactions found over 9 reactions in the full pathway
- GLYOXYLATE-BYPASS, glyoxylate cycle:
- 6 reactions found over 6 reactions in the full pathway
- PWY-7294, D-xylose degradation IV:
- 1 reactions found over 7 reactions in the full pathway
- PWY-7295, L-arabinose degradation IV:
- 1 reactions found over 8 reactions in the full pathway
- PWY-7854, crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered):
- 1 reactions found over 14 reactions in the full pathway
- PWY-7118, chitin deacetylation:
- 5 reactions found over 4 reactions in the full pathway
- GLYOXDEG-PWY, glycolate and glyoxylate degradation II:
- 2 reactions found over 2 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
External links
- METANETX-RXN : MNXR101347
- RHEA:
- PIR:
- LIGAND-RXN:
- UNIPROT: