Difference between revisions of "SJ20513"
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(Created page with "Category:gene == Gene SJ15379 == * transcription-direction: ** negative * right-end-position: ** 29947 * left-end-position: ** 11728 * centisome-position: ** 1.6641481...") |
(Created page with "Category:gene == Gene SJ10087 == * transcription-direction: ** positive * right-end-position: ** 17477 * left-end-position: ** 3434 * centisome-position: ** 10.261160...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ10087 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 17477 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 3434 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 10.261160 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[DIHYDLIPACETRANS-RXN]] |
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[PYRUVDEH-RXN]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN0-1133]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[PWY-7384]] |
| − | ** '''3''' reactions found over '''4''' reactions in the full pathway | + | ** '''6''' reactions found over '''10''' reactions in the full pathway |
| − | * [[ | + | * [[GLYCOLYSIS-TCA-GLYOX-BYPASS]] |
| − | ** ''' | + | ** '''3''' reactions found over '''1''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-7218]] |
| − | ** ''' | + | ** '''7''' reactions found over '''4''' reactions in the full pathway |
| − | * [[PWY | + | * [[PWY-5482]] |
| − | ** ''' | + | ** '''2''' reactions found over '''3''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | * [[PWY-5537]] |
| − | {{#set: right-end-position= | + | ** '''2''' reactions found over '''2''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | * [[PWY-6886]] |
| − | {{#set: centisome-position= | + | ** '''8''' reactions found over '''5''' reactions in the full pathway |
| + | * [[PYRUVDEHYD-PWY]] | ||
| + | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=17477}} | ||
| + | {{#set: left-end-position=3434}} | ||
| + | {{#set: centisome-position=10.261160 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=7}} |
Revision as of 09:26, 27 August 2019
Contents
Gene SJ10087
- transcription-direction:
- positive
- right-end-position:
- 17477
- left-end-position:
- 3434
- centisome-position:
- 10.261160
Organism(s) associated with this gene
Reaction(s) associated
- DIHYDLIPACETRANS-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: annotation
- PYRUVDEH-RXN
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN0-1133
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-7384
- 6 reactions found over 10 reactions in the full pathway
- GLYCOLYSIS-TCA-GLYOX-BYPASS
- 3 reactions found over 1 reactions in the full pathway
- PWY-7218
- 7 reactions found over 4 reactions in the full pathway
- PWY-5482
- 2 reactions found over 3 reactions in the full pathway
- PWY-5537
- 2 reactions found over 2 reactions in the full pathway
- PWY-6886
- 8 reactions found over 5 reactions in the full pathway
- PYRUVDEHYD-PWY
- 3 reactions found over 3 reactions in the full pathway
