Difference between revisions of "CPD-13025"
Jump to navigation
Jump to search
(Created page with "Category:gene == Gene SJ20929 == == Organism(s) associated with this gene == * S.japonica_carotenoid_curated == Reaction(s) associated == * RR-BUTANEDIOL-DEHYDROGEN...") |
(Created page with "Category:gene == Gene SJ21782 == * transcription-direction: ** negative * right-end-position: ** 80450 * left-end-position: ** 47546 * centisome-position: ** 25.505049...") |
||
Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ21782 == |
+ | * transcription-direction: | ||
+ | ** negative | ||
+ | * right-end-position: | ||
+ | ** 80450 | ||
+ | * left-end-position: | ||
+ | ** 47546 | ||
+ | * centisome-position: | ||
+ | ** 25.505049 | ||
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | * [[RXN-8988]] |
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[SUCCCOASYN-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[SUCL_LPAREN_gdp_RPAREN_m]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''1''' reactions found over ''' | + | * [[PWY-5749]] |
− | * [[ | + | ** '''1''' reactions found over '''4''' reactions in the full pathway |
− | ** ''' | + | * [[P42-PWY]] |
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-5392]] | ||
+ | ** '''6''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-5690]] | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY66-398]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-6969]] | ||
+ | ** '''10''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-5913]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-5538]] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-5537]] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[TCA]] | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[P23-PWY]] | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-7384]] | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-6728]] | ||
+ | ** '''11''' reactions found over '''19''' reactions in the full pathway | ||
+ | </div> | ||
+ | {{#set: transcription-direction=negative}} | ||
+ | {{#set: right-end-position=80450}} | ||
+ | {{#set: left-end-position=47546}} | ||
+ | {{#set: centisome-position=25.505049 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=13}} |
Revision as of 09:27, 27 August 2019
Contents
Gene SJ21782
- transcription-direction:
- negative
- right-end-position:
- 80450
- left-end-position:
- 47546
- centisome-position:
- 25.505049
Organism(s) associated with this gene
Reaction(s) associated
- RXN-8988
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- SUCCCOASYN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- SUCCINATE--COA-LIGASE-GDP-FORMING-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- SUCL_LPAREN_gdp_RPAREN_m
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-5749
- 1 reactions found over 4 reactions in the full pathway
- P42-PWY
- 5 reactions found over 7 reactions in the full pathway
- PWY-5392
- 6 reactions found over 12 reactions in the full pathway
- PWY-5690
- 8 reactions found over 9 reactions in the full pathway
- PWY66-398
- 10 reactions found over 11 reactions in the full pathway
- PWY-6969
- 10 reactions found over 12 reactions in the full pathway
- PWY-5913
- 10 reactions found over 11 reactions in the full pathway
- PWY-5538
- 2 reactions found over 2 reactions in the full pathway
- PWY-5537
- 2 reactions found over 2 reactions in the full pathway
- TCA
- 9 reactions found over 10 reactions in the full pathway
- P23-PWY
- 9 reactions found over 12 reactions in the full pathway
- PWY-7384
- 6 reactions found over 10 reactions in the full pathway
- PWY-6728
- 11 reactions found over 19 reactions in the full pathway