Difference between revisions of "CIS-ACONITATE"
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(Created page with "Category:gene == Gene SJ03975 == * transcription-direction: ** negative * right-end-position: ** 39448 * left-end-position: ** 21905 * centisome-position: ** 19.20716...") |
(Created page with "Category:gene == Gene SJ18340 == * transcription-direction: ** negative * right-end-position: ** 152919 * left-end-position: ** 132502 * centisome-position: ** 53.309357...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ18340 == |
* transcription-direction: | * transcription-direction: | ||
** negative | ** negative | ||
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 152919 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 132502 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 53.309357 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[CHOLINE-KINASE-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | + | ** Category: [[orthology]] | |
| − | ** Category: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | *** source: [[ | + | * [[ETHANOLAMINE-KINASE-RXN]] |
| − | * [[ | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[PWY-7782]] |
| − | ** ''' | + | ** '''11''' reactions found over '''16''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY3O-450]] |
| − | ** ''' | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-7818]] |
| − | ** ''' | + | ** '''2''' reactions found over '''19''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-7886]] |
| − | ** ''' | + | ** '''2''' reactions found over '''3''' reactions in the full pathway |
| − | * [[ | + | * [[PWY-3385]] |
| − | ** ''' | + | ** '''2''' reactions found over '''6''' reactions in the full pathway |
| + | * [[PWY4FS-6]] | ||
| + | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
{{#set: transcription-direction=negative}} | {{#set: transcription-direction=negative}} | ||
| − | {{#set: right-end-position= | + | {{#set: right-end-position=152919}} |
| − | {{#set: left-end-position= | + | {{#set: left-end-position=132502}} |
| − | {{#set: centisome-position= | + | {{#set: centisome-position=53.309357 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=2}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=6}} |
Revision as of 09:28, 27 August 2019
Contents
Gene SJ18340
- transcription-direction:
- negative
- right-end-position:
- 152919
- left-end-position:
- 132502
- centisome-position:
- 53.309357
Organism(s) associated with this gene
Reaction(s) associated
- CHOLINE-KINASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- ETHANOLAMINE-KINASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-7782
- 11 reactions found over 16 reactions in the full pathway
- PWY3O-450
- 3 reactions found over 3 reactions in the full pathway
- PWY-7818
- 2 reactions found over 19 reactions in the full pathway
- PWY-7886
- 2 reactions found over 3 reactions in the full pathway
- PWY-3385
- 2 reactions found over 6 reactions in the full pathway
- PWY4FS-6
- 3 reactions found over 4 reactions in the full pathway
