Difference between revisions of "CPD-4568"

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(Created page with "Category:gene == Gene SJ18471 == * transcription-direction: ** negative * right-end-position: ** 230453 * left-end-position: ** 211671 * centisome-position: ** 86.64885...")
(Created page with "Category:gene == Gene SJ21564 == * transcription-direction: ** positive * right-end-position: ** 372873 * left-end-position: ** 368358 * centisome-position: ** 61.890495...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ18471 ==
+
== Gene SJ21564 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 230453
+
** 372873
 
* left-end-position:
 
* left-end-position:
−
** 211671
+
** 368358
 
* centisome-position:
 
* centisome-position:
−
** 86.64885    
+
** 61.890495    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[ACONITATEDEHYDR-RXN]]
+
* [[HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[ACONITATEHYDR-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-14047]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[LEU-DEG2-PWY]]
−
* [[TCA]]
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
* [[PWY66-367]]
−
* [[PWY-6549]]
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-5074]]
−
* [[PWY-5392]]
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
** '''6''' reactions found over '''12''' reactions in the full pathway
+
{{#set: transcription-direction=positive}}
−
* [[PWY-5690]]
+
{{#set: right-end-position=372873}}
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
{{#set: left-end-position=368358}}
−
* [[P105-PWY]]
+
{{#set: centisome-position=61.890495   }}
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[REDCITCYC]]
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY66-398]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7254]]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6969]]
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]]
 
−
** '''11''' reactions found over '''16''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5750]]
 
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5913]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[P23-PWY]]
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7124]]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6728]]
 
−
** '''11''' reactions found over '''19''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=230453}}
 
−
{{#set: left-end-position=211671}}
 
−
{{#set: centisome-position=86.64885   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=3}}
+
{{#set: nb reaction associated=1}}
−
{{#set: nb pathway associated=16}}
+
{{#set: nb pathway associated=3}}

Revision as of 09:28, 27 August 2019

Gene SJ21564

  • transcription-direction:
    • positive
  • right-end-position:
    • 372873
  • left-end-position:
    • 368358
  • centisome-position:
    • 61.890495

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • LEU-DEG2-PWY
    • 4 reactions found over 6 reactions in the full pathway
  • PWY66-367
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5074
    • 1 reactions found over 2 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-4568&oldid=33498"