Difference between revisions of "CPD-15368"

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(Created page with "Category:gene == Gene SJ18485 == * transcription-direction: ** negative * right-end-position: ** 78430 * left-end-position: ** 41424 * centisome-position: ** 16.984846...")
(Created page with "Category:gene == Gene SJ01916 == * transcription-direction: ** positive * right-end-position: ** 499618 * left-end-position: ** 493268 * centisome-position: ** 90.073715...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ18485 ==
+
== Gene SJ01916 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 78430
+
** 499618
 
* left-end-position:
 
* left-end-position:
−
** 41424
+
** 493268
 
* centisome-position:
 
* centisome-position:
−
** 16.984846    
+
** 90.073715    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
+
* [[2-ACYLGLYCEROL-O-ACYLTRANSFERASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN1G-1435]]
+
* [[2.3.1.75-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN1G-1436]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RETINOL-O-FATTY-ACYLTRANSFERASE-RXN]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN1G-1437]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-12547]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN1G-1438]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-12639]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN1G-1439]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-15090]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[TREHALOSE6PSYN-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-9356]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
** Category: [[annotation]]
−
* [[TREHALOSEPHOSPHA-RXN]]
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXNQT-4193]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[UG6PGT]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[UG6PGTn]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWYG-321]]
+
* [[PWY-5885]]
−
** '''26''' reactions found over '''182''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[TRESYN-PWY]]
+
* [[PWY-5884]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7900]]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-881]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[TREHALOSESYN-PWY]]
 
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
−
{{#set: transcription-direction=negative}}
+
* [[TRIGLSYN-PWY]]
−
{{#set: right-end-position=78430}}
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
{{#set: left-end-position=41424}}
+
* [[PWY-6873]]
−
{{#set: centisome-position=16.984846   }}
+
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7420]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-282]]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=499618}}
 +
{{#set: left-end-position=493268}}
 +
{{#set: centisome-position=90.073715   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=10}}
+
{{#set: nb reaction associated=9}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=6}}

Revision as of 09:28, 27 August 2019

Gene SJ01916

  • transcription-direction:
    • positive
  • right-end-position:
    • 499618
  • left-end-position:
    • 493268
  • centisome-position:
    • 90.073715

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5885
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5884
    • 1 reactions found over 2 reactions in the full pathway
  • TRIGLSYN-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-6873
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7420
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-282
    • 1 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-15368&oldid=33790"