Difference between revisions of "CPD-8052"

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(Created page with "Category:gene == Gene SJ13450 == * transcription-direction: ** positive * right-end-position: ** 436126 * left-end-position: ** 425411 * centisome-position: ** 58.388256...")
(Created page with "Category:gene == Gene SJ06969 == * transcription-direction: ** positive * right-end-position: ** 179426 * left-end-position: ** 171123 * centisome-position: ** 36.6798...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ13450 ==
+
== Gene SJ06969 ==
 
* transcription-direction:
 
* transcription-direction:
 
** positive
 
** positive
 
* right-end-position:
 
* right-end-position:
−
** 436126
+
** 179426
 
* left-end-position:
 
* left-end-position:
−
** 425411
+
** 171123
 
* centisome-position:
 
* centisome-position:
−
** 58.388256    
+
** 36.6798    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[2PGADEHYDRAT-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[ESTRADIOL-17-BETA-DEHYDROGENASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12560]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12968]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12994]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13279]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13298]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13299]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13300]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13301]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13443]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14484]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14493]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16020]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16095]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16112]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16129]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16154]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-17109]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-5901]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-7698]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
</div>
−
* [[3-DEHYDROQUINATE-DEHYDRATASE-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[GLUCONEO-PWY]]
+
* [[PWY66-380]]
−
** '''12''' reactions found over '''13''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
* [[P124-PWY]]
+
* [[PWY-7948]]
−
** '''12''' reactions found over '''15''' reactions in the full pathway
+
** '''2''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-2221]]
+
* [[PWY-7592]]
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[NPGLUCAT-PWY]]
+
* [[PWY-5353]]
−
** '''4''' reactions found over '''9''' reactions in the full pathway
+
** '''7''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-1622]]
+
* [[PWY-7724]]
−
** '''6''' reactions found over '''13''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[P122-PWY]]
+
* [[PWY-7619]]
−
** '''16''' reactions found over '''18''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5484]]
+
* [[PWY-7602]]
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[P341-PWY]]
+
* [[PWY-7036]]
−
** '''6''' reactions found over '''10''' reactions in the full pathway
+
** '''14''' reactions found over '''16''' reactions in the full pathway
−
* [[GLYCOLYSIS]]
+
* [[PWY-7727]]
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[ANAGLYCOLYSIS-PWY]]
+
* [[PWY-7053]]
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY66-399]]
+
* [[PWY-7606]]
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''8''' reactions found over '''14''' reactions in the full pathway
−
* [[PWY-1042]]
+
* [[PWY-6433]]
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
** '''17''' reactions found over '''22''' reactions in the full pathway
−
* [[PWY-6142]]
+
* [[PWY-7049]]
−
** '''10''' reactions found over '''13''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7003]]
+
* [[PWY-6958]]
−
** '''8''' reactions found over '''6''' reactions in the full pathway
+
** '''5''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-6886]]
+
* [[PWY-6598]]
−
** '''8''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6901]]
+
* [[PWY-7601]]
−
** '''10''' reactions found over '''8''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7124]]
+
* [[PWY-7725]]
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5723]]
+
* [[PWY-7728]]
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7218]]
+
* [[PWY-7726]]
−
** '''7''' reactions found over '''4''' reactions in the full pathway
+
** '''8''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-6707]]
+
* [[PWY-5676]]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6163]]
+
* [[PWY1-3]]
−
** '''6''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[QUINATEDEG-PWY]]
+
* [[PWY-7216]]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6416]]
+
* [[PWY-5741]]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5080]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 
</div>
 
</div>
 
{{#set: transcription-direction=positive}}
 
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=436126}}
+
{{#set: right-end-position=179426}}
−
{{#set: left-end-position=425411}}
+
{{#set: left-end-position=171123}}
−
{{#set: centisome-position=58.388256   }}
+
{{#set: centisome-position=36.6798   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=2}}
+
{{#set: nb reaction associated=20}}
−
{{#set: nb pathway associated=23}}
+
{{#set: nb pathway associated=24}}

Revision as of 09:28, 27 August 2019

Gene SJ06969

  • transcription-direction:
    • positive
  • right-end-position:
    • 179426
  • left-end-position:
    • 171123
  • centisome-position:
    • 36.6798

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY66-380
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7948
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-7592
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5353
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-7724
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7619
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7602
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7036
    • 14 reactions found over 16 reactions in the full pathway
  • PWY-7727
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-7053
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-7606
    • 8 reactions found over 14 reactions in the full pathway
  • PWY-6433
    • 17 reactions found over 22 reactions in the full pathway
  • PWY-7049
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-6958
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-6598
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7601
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7725
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7728
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7726
    • 8 reactions found over 13 reactions in the full pathway
  • PWY-5676
    • 4 reactions found over 5 reactions in the full pathway
  • PWY1-3
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7216
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5741
    • 2 reactions found over 11 reactions in the full pathway
  • PWY-5080
    • 3 reactions found over 4 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-8052&oldid=34000"