Difference between revisions of "CPD-352"

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(Created page with "Category:gene == Gene SJ15200 == * transcription-direction: ** positive * right-end-position: ** 705415 * left-end-position: ** 687168 * centisome-position: ** 97.133766...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16133 RXN-16133] == * direction: ** reversible * common-name: ** 3-hydroxyacyl-coa dehydrogenas...")
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[[Category:gene]]
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[[Category:reaction]]
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== Gene SJ15200 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16133 RXN-16133] ==
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* transcription-direction:
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* direction:
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** positive
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** reversible
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* right-end-position:
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* common-name:
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** 705415
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** 3-hydroxyacyl-coa dehydrogenase
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* left-end-position:
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* ec-number:
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** 687168
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** [http://enzyme.expasy.org/EC/1.1.1.35 ec-1.1.1.35]
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* centisome-position:
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== Reaction formula ==
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** 97.133766   
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* 1 [[L-3-HYDROXYACYL-COA]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-KETOACYL-COA]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
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== Organism(s) associated with this gene ==
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== Gene(s) associated with this reaction ==
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* [[S.japonica_carotenoid_curated]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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== Reaction(s) associated ==
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* Gene: [[SJ06127]]
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* [[DXS-RXN]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ16470]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ17348]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ03584]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ16180]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ01444]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ07211]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* Gene: [[SJ21390]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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** Category: [[annotation]]
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* [[PYFLAVOXRE-RXN]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[PYRUFLAVREDUCT-RXN]]
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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== Pathway(s) associated ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* [[PWY-6891]]
 
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** '''4''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-6892]]
 
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** '''5''' reactions found over '''7''' reactions in the full pathway
 
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* [[PYRIDOXSYN-PWY]]
 
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** '''3''' reactions found over '''7''' reactions in the full pathway
 
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* [[NONMEVIPP-PWY]]
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7560]]
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
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* [[NPGLUCAT-PWY]]
 
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** '''4''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-5493]]
 
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** '''1''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-6863]]
 
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** '''9''' reactions found over '''11''' reactions in the full pathway
 
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* [[PWY-6587]]
 
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** '''2''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-6588]]
 
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** '''2''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-5497]]
 
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** '''10''' reactions found over '''24''' reactions in the full pathway
 
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* [[PWY-6583]]
 
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** '''6''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-5483]]
 
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** '''1''' reactions found over '''2''' reactions in the full pathway
 
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* [[CENTFERM-PWY]]
 
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** '''5''' reactions found over '''7''' reactions in the full pathway
 
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* [[P42-PWY]]
 
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** '''5''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-5392]]
 
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** '''6''' reactions found over '''12''' reactions in the full pathway
 
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* [[P142-PWY]]
 
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** '''2''' reactions found over '''1''' reactions in the full pathway
 
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* [[GLUDEG-II-PWY]]
 
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** '''3''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-6142]]
 
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** '''10''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-5538]]
 
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** '''2''' reactions found over '''2''' reactions in the full pathway
 
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* [[P23-PWY]]
 
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** '''9''' reactions found over '''12''' reactions in the full pathway
 
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* [[PWY-6876]]
 
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** '''2''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-5600]]
 
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** '''2''' reactions found over '''1''' reactions in the full pathway
 
 
</div>
 
</div>
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{{#set: transcription-direction=positive}}
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== Pathway(s)  ==
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{{#set: right-end-position=705415}}
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== Reconstruction information  ==
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{{#set: left-end-position=687168}}
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: centisome-position=97.133766    }}
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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== External links  ==
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{{#set: nb reaction associated=3}}
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{{#set: direction=reversible}}
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{{#set: nb pathway associated=23}}
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{{#set: common-name=3-hydroxyacyl-coa dehydrogenase}}
 +
{{#set: ec-number=ec-1.1.1.35}}
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{{#set: nb gene associated=8}}
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{{#set: nb pathway associated=0}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:28, 27 August 2019

Reaction RXN-16133

  • direction:
    • reversible
  • common-name:
    • 3-hydroxyacyl-coa dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-352&oldid=34124"