Difference between revisions of "CPD-4211"

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(Created page with "Category:gene == Gene SJ05908 == * transcription-direction: ** negative * right-end-position: ** 36374 * left-end-position: ** 10569 * centisome-position: ** 12.234055...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12728 RXN-12728] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:gene]]
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[[Category:reaction]]
== Gene SJ05908 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12728 RXN-12728] ==
* transcription-direction:
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* direction:
** negative
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** left-to-right
* right-end-position:
+
* ec-number:
** 36374
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** [http://enzyme.expasy.org/EC/2.5.1 ec-2.5.1]
* left-end-position:
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== Reaction formula ==
** 10569
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* 1 [[L-SELENOCYSTEINE]][c] '''+''' 1 [[O-PHOSPHO-L-HOMOSERINE]][c] '''=>''' 1 [[CPD-13717]][c] '''+''' 1 [[Pi]][c]
* centisome-position:
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== Gene(s) associated with this reaction  ==
** 12.234055   
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* Gene: [[SJ20026]]
== Organism(s) associated with this gene  ==
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** Category: [[orthology]]
* [[S.japonica_carotenoid_curated]]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
== Reaction(s) associated ==
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* [[ATPASE-RXN]]
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== Pathway(s) ==
** Category: [[annotation]]
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* [[PWY-6936]], seleno-amino acid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6936 PWY-6936]
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''5''' reactions found over '''5''' reactions in the full pathway
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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== Reconstruction information  ==
** Category: [[annotation]]
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
* [[RXN-12195]]
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{{#set: direction=left-to-right}}
** Category: [[annotation]]
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{{#set: ec-number=ec-2.5.1}}
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: nb gene associated=1}}
* [[RXN-12196]]
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{{#set: nb pathway associated=1}}
** Category: [[annotation]]
+
{{#set: reconstruction category=orthology}}
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
{{#set: reconstruction tool=pantograph}}
* [[RXN0-5462]]
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{{#set: reconstruction comment=n.a}}
** Category: [[annotation]]
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== Pathway(s) associated ==
 
* [[PWY-7210]]
 
** '''8''' reactions found over '''8''' reactions in the full pathway
 
* [[PWY-7198]]
 
** '''6''' reactions found over '''7''' reactions in the full pathway
 
* [[PWY-7184]]
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY-6545]]
 
** '''8''' reactions found over '''9''' reactions in the full pathway
 
{{#set: transcription-direction=negative}}
 
{{#set: right-end-position=36374}}
 
{{#set: left-end-position=10569}}
 
{{#set: centisome-position=12.234055    }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: nb reaction associated=5}}
 
{{#set: nb pathway associated=4}}
 

Revision as of 09:28, 27 August 2019

Reaction RXN-12728

  • direction:
    • left-to-right
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6936, seleno-amino acid biosynthesis (plants): PWY-6936
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links