Difference between revisions of "Glc2Man9GlcNAc2-proteins"
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(Created page with "Category:gene == Gene SJ05117 == * transcription-direction: ** positive * right-end-position: ** 17078 * left-end-position: ** 11895 * centisome-position: ** 12.326552...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12726 RXN-12726] == * direction: ** left-to-right * common-name: ** selenocysteine synthase **...") |
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Line 1: | Line 1: | ||
− | [[Category: | + | [[Category:reaction]] |
− | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12726 RXN-12726] == |
− | * | + | * direction: |
− | ** | + | ** left-to-right |
− | * | + | * common-name: |
− | ** | + | ** selenocysteine synthase |
− | * | + | ** cysteine synthase |
− | * | + | * ec-number: |
− | * | + | ** [http://enzyme.expasy.org/EC/2.5.1.47 ec-2.5.1.47] |
− | ** | + | == Reaction formula == |
− | == | + | * 1 [[ACETYLSERINE]][c] '''+''' 1 [[CPD-678]][c] '''=>''' 1 [[ACET]][c] '''+''' 1 [[L-SELENOCYSTEINE]][c] '''+''' 1 [[PROTON]][c] |
− | * [[ | + | == Gene(s) associated with this reaction == |
− | == | + | * Gene: [[SJ15937]] |
− | * [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
− | * [[ | + | * Gene: [[SJ16706]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | {{#set: | + | ** Category: [[orthology]] |
− | {{#set: | + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | {{#set: | + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | {{#set: | + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | {{#set: | + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | {{#set: | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
+ | * Gene: [[SJ01657]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | == Pathway(s) == | ||
+ | * [[PWY-6936]], seleno-amino acid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6936 PWY-6936] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | == Reconstruction information == | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | == External links == | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=selenocysteine synthase|cysteine synthase}} | ||
+ | {{#set: ec-number=ec-2.5.1.47}} | ||
+ | {{#set: nb gene associated=3}} | ||
+ | {{#set: nb pathway associated=1}} | ||
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
+ | {{#set: reconstruction comment=n.a}} | ||
+ | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana}} |
Revision as of 09:28, 27 August 2019
Contents
Reaction RXN-12726
- direction:
- left-to-right
- common-name:
- selenocysteine synthase
- cysteine synthase
- ec-number:
Reaction formula
- 1 ACETYLSERINE[c] + 1 CPD-678[c] => 1 ACET[c] + 1 L-SELENOCYSTEINE[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ15937
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ16706
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ01657
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6936, seleno-amino acid biosynthesis (plants): PWY-6936
- 5 reactions found over 5 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a